Variant report

Variant	rs28736424
Chromosome Location	chr7:136426904-136426905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10237943	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10254377	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257944	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258085	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279562	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1364489	1.00[ASN][1000 genomes]
rs2350451	1.00[ASN][1000 genomes]
rs62485204	1.00[ASN][1000 genomes]
rs6467684	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6943727	1.00[ASN][1000 genomes]
rs6950239	1.00[ASN][1000 genomes]
rs6970010	1.00[ASN][1000 genomes]
rs6974097	1.00[ASN][1000 genomes]
rs73727424	0.90[ASN][1000 genomes]
rs7810141	1.00[ASN][1000 genomes]
rs9642057	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3374876	chr7:136413245-136480051	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136425800-136428000	Weak transcription	Fetal Heart	heart
2	chr7:136426400-136427200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:136426800-136427000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:136426800-136427200	Enhancers	Brain Cingulate Gyrus	brain
5	chr7:136426800-136427200	Enhancers	Brain Hippocampus Middle	brain
6	chr7:136426800-136427200	Enhancers	Colon Smooth Muscle	Colon
7	chr7:136426800-136427200	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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