Variant report
| Variant | rs9642057 |
|---|---|
| Chromosome Location | chr7:136469872-136469873 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PTN-2 | chr7:136468822-136470638 | ENSG00000234352 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10237943 | 0.90[ASN][1000 genomes] |
| rs10254377 | 1.00[ASN][1000 genomes] |
| rs10257944 | 1.00[ASN][1000 genomes] |
| rs10258085 | 1.00[ASN][1000 genomes] |
| rs10266414 | 1.00[ASN][1000 genomes] |
| rs10279562 | 0.90[ASN][1000 genomes] |
| rs11979858 | 0.87[AFR][1000 genomes] |
| rs1364489 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2350451 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28736424 | 1.00[ASN][1000 genomes] |
| rs62485204 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6467684 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6943727 | 1.00[ASN][1000 genomes] |
| rs6950239 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6970010 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6974097 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73727424 | 0.90[ASN][1000 genomes] |
| rs7810141 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3374876 | chr7:136413245-136480051 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029192 | chr7:136433278-137147566 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9642057 | HIPK2 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
