Variant report
| Variant | rs10254377 |
|---|---|
| Chromosome Location | chr7:136423603-136423604 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:136419237..136421659-chr7:136423427..136425253,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10237943 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10257944 | 0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10258085 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10266414 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10279562 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1364489 | 1.00[ASN][1000 genomes] |
| rs2350451 | 1.00[ASN][1000 genomes] |
| rs28736424 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62485204 | 1.00[ASN][1000 genomes] |
| rs6467684 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6943727 | 1.00[ASN][1000 genomes] |
| rs6950239 | 1.00[ASN][1000 genomes] |
| rs6970010 | 1.00[ASN][1000 genomes] |
| rs6974097 | 1.00[ASN][1000 genomes] |
| rs73727424 | 0.90[ASN][1000 genomes] |
| rs7790740 | 0.82[EUR][1000 genomes] |
| rs7809833 | 0.82[EUR][1000 genomes] |
| rs7810141 | 1.00[ASN][1000 genomes] |
| rs9642057 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518439 | chr7:136134265-136452082 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3374876 | chr7:136413245-136480051 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:136423400-136423800 | Weak transcription | Fetal Heart | heart |
