Variant report

Variant	rs10240629
Chromosome Location	chr7:83946777-83946778
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1006794	1.00[AFR][1000 genomes]
rs10254748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974097	1.00[AFR][1000 genomes]
rs11976376	1.00[AFR][1000 genomes]
rs11977024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982998	1.00[AFR][1000 genomes]
rs17158745	1.00[AFR][1000 genomes]
rs17158769	0.96[AFR][1000 genomes]
rs17158773	0.96[AFR][1000 genomes]
rs17158787	0.96[AFR][1000 genomes]
rs17158792	1.00[AFR][1000 genomes]
rs17158800	1.00[AFR][1000 genomes]
rs17158801	1.00[AFR][1000 genomes]
rs17158808	1.00[AFR][1000 genomes]
rs17158810	1.00[AFR][1000 genomes]
rs17158823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2158321	1.00[AFR][1000 genomes]
rs28386953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55898411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56672504	0.84[AFR][1000 genomes]
rs59179675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61237876	1.00[AFR][1000 genomes]
rs73709790	0.96[AFR][1000 genomes]
rs73709791	0.96[AFR][1000 genomes]
rs73709793	0.96[AFR][1000 genomes]
rs73709795	0.89[AFR][1000 genomes]
rs73709796	1.00[AFR][1000 genomes]
rs73709797	1.00[AFR][1000 genomes]
rs73709798	1.00[AFR][1000 genomes]
rs73709802	1.00[AFR][1000 genomes]
rs73711503	1.00[AFR][1000 genomes]
rs73711506	1.00[AFR][1000 genomes]
rs73711507	1.00[AFR][1000 genomes]
rs73711509	1.00[AFR][1000 genomes]
rs73711511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712709	1.00[AFR][1000 genomes]
rs73712713	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1793815	chr7:83909503-83997755	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv888631	chr7:83911271-84010005	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv981810	chr7:83946250-83952505	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83930800-83950000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:83942400-83947000	Active TSS	Stomach Smooth Muscle	stomach
3	chr7:83942800-83946800	Active TSS	Colon Smooth Muscle	Colon
4	chr7:83943600-83946800	Active TSS	Rectal Smooth Muscle	rectum
5	chr7:83945800-83947200	Active TSS	NHDF-Ad	bronchial
6	chr7:83946400-83947600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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