Variant report

Variant	rs11974097
Chromosome Location	chr7:83845831-83845832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1006794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240629	1.00[AFR][1000 genomes]
rs10254748	1.00[AFR][1000 genomes]
rs11976376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977024	1.00[AFR][1000 genomes]
rs11982998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158769	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158787	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158823	1.00[AFR][1000 genomes]
rs2158321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28386953	1.00[AFR][1000 genomes]
rs55898411	1.00[AFR][1000 genomes]
rs56672504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59179675	1.00[AFR][1000 genomes]
rs61237876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709795	0.89[AFR][1000 genomes]
rs73709796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711511	1.00[AFR][1000 genomes]
rs73711513	1.00[AFR][1000 genomes]
rs73711515	1.00[AFR][1000 genomes]
rs73711516	1.00[AFR][1000 genomes]
rs73711517	1.00[AFR][1000 genomes]
rs73711519	1.00[AFR][1000 genomes]
rs73712709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83838200-83846400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:83840000-83846200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:83845200-83846600	Enhancers	Fetal Heart	heart
4	chr7:83845600-83846000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:83845600-83846200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:83845800-83847200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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