Variant report
Variant | rs2158321 |
---|---|
Chromosome Location | chr7:83909695-83909696 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1006794 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10240629 | 1.00[AFR][1000 genomes] |
rs10254748 | 1.00[AFR][1000 genomes] |
rs11974097 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11976376 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11977024 | 1.00[AFR][1000 genomes] |
rs11982998 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158745 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158769 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158773 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158787 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158792 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158801 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158808 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158810 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17158823 | 1.00[AFR][1000 genomes] |
rs28386953 | 1.00[AFR][1000 genomes] |
rs55898411 | 1.00[AFR][1000 genomes] |
rs56672504 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs59179675 | 1.00[AFR][1000 genomes] |
rs61237876 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73709790 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73709791 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73709793 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73709795 | 0.89[AFR][1000 genomes] |
rs73709796 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73709797 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73709798 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73709802 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73711503 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73711506 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73711507 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73711509 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73711511 | 1.00[AFR][1000 genomes] |
rs73711513 | 1.00[AFR][1000 genomes] |
rs73711515 | 1.00[AFR][1000 genomes] |
rs73711516 | 1.00[AFR][1000 genomes] |
rs73711517 | 1.00[AFR][1000 genomes] |
rs73711519 | 1.00[AFR][1000 genomes] |
rs73712709 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73712713 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529344 | chr7:83714286-84592857 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
2 | nsv1017884 | chr7:83724138-83972995 | Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv538995 | chr7:83724138-83972995 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | esv2754468 | chr7:83851249-84166749 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv5818 | chr7:83874968-83919804 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | esv1793815 | chr7:83909503-83997755 | Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:83894200-83924000 | Weak transcription | NHDF-Ad | bronchial |
2 | chr7:83901400-83910600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
3 | chr7:83903800-83911400 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
4 | chr7:83908200-83913600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
5 | chr7:83908200-83913600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |