Variant report

Variant	rs73711509
Chromosome Location	chr7:83922560-83922561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1006794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240629	1.00[AFR][1000 genomes]
rs10254748	1.00[AFR][1000 genomes]
rs11974097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977024	1.00[AFR][1000 genomes]
rs11982998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158769	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158787	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158823	1.00[AFR][1000 genomes]
rs2158321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28386953	1.00[AFR][1000 genomes]
rs55898411	1.00[AFR][1000 genomes]
rs56672504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59179675	1.00[AFR][1000 genomes]
rs61237876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709795	0.89[AFR][1000 genomes]
rs73709796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711511	1.00[AFR][1000 genomes]
rs73711513	1.00[AFR][1000 genomes]
rs73711515	1.00[AFR][1000 genomes]
rs73711516	1.00[AFR][1000 genomes]
rs73711517	1.00[AFR][1000 genomes]
rs73711519	1.00[AFR][1000 genomes]
rs73712709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1793815	chr7:83909503-83997755	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv524905	chr7:83911271-83944506	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv888631	chr7:83911271-84010005	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2762683	chr7:83916748-83932659	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83894200-83924000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links