Variant report

Variant	rs17158801
Chromosome Location	chr7:83904156-83904157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1006794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240629	1.00[AFR][1000 genomes]
rs10254748	1.00[AFR][1000 genomes]
rs11974097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977024	1.00[AFR][1000 genomes]
rs11982998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158769	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158787	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158823	1.00[AFR][1000 genomes]
rs2158321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28386953	1.00[AFR][1000 genomes]
rs55898411	1.00[AFR][1000 genomes]
rs56672504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59179675	1.00[AFR][1000 genomes]
rs61237876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709795	0.89[AFR][1000 genomes]
rs73709796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711511	1.00[AFR][1000 genomes]
rs73711513	1.00[AFR][1000 genomes]
rs73711515	1.00[AFR][1000 genomes]
rs73711516	1.00[AFR][1000 genomes]
rs73711517	1.00[AFR][1000 genomes]
rs73711519	1.00[AFR][1000 genomes]
rs73712709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv5818	chr7:83874968-83919804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83894200-83924000	Weak transcription	NHDF-Ad	bronchial
2	chr7:83901400-83910600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:83903400-83904200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:83903400-83904200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:83903400-83904200	Enhancers	Brain Germinal Matrix	brain
6	chr7:83903400-83908200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:83903600-83904800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:83903800-83904800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:83903800-83905800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:83903800-83905800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:83903800-83905800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:83903800-83905800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:83903800-83906200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:83903800-83906800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:83903800-83906800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:83903800-83907400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:83903800-83911400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:83904000-83905200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:83904000-83906200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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