Variant report

Variant	rs10242241
Chromosome Location	chr7:98966534-98966535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98963718..98966584-chr7:99003795..99005637,2	MCF-7	breast:
2	chr7:98964521..98966549-chr7:98972530..98974086,2	K562	blood:
3	chr7:98965122..98966630-chr7:98972244..98974345,2	K562	blood:
4	chr7:98965082..98967314-chr7:98975254..98977961,2	K562	blood:
5	chr7:98966478..98969149-chr7:98977868..98979453,2	MCF-7	breast:
6	chr7:98959822..98968172-chr7:98968902..98974586,14	MCF-7	breast:
7	chr7:98965945..98968124-chr7:99006948..99008608,2	MCF-7	breast:
8	chr7:98965968..98969529-chr7:98970611..98972525,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106245	Chromatin interaction
ENSG00000130429	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10046490	0.89[AMR][1000 genomes]
rs10155956	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10237212	1.00[ASW][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10247946	1.00[ASW][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263954	0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264303	1.00[MEX][hapmap]
rs10264582	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10271695	0.84[AMR][1000 genomes]
rs17161650	0.87[ASW][hapmap]
rs28655791	1.00[ASW][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28754375	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59463042	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60971917	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98924600-98971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98927200-98966800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:98928400-98967200	Strong transcription	Fetal Thymus	thymus
4	chr7:98930000-98968200	Strong transcription	Fetal Intestine Small	intestine
5	chr7:98930200-98968400	Strong transcription	Fetal Stomach	stomach
6	chr7:98930800-98966800	Strong transcription	Adipose Nuclei	Adipose
7	chr7:98930800-98967000	Strong transcription	Fetal Muscle Leg	muscle
8	chr7:98930800-98967600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:98935600-98971600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:98944200-98967200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr7:98946400-98967600	Strong transcription	Stomach Smooth Muscle	stomach
12	chr7:98951000-98967000	Strong transcription	Left Ventricle	heart
13	chr7:98953400-98967200	Strong transcription	Rectal Smooth Muscle	rectum
14	chr7:98953800-98971600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:98955000-98971600	Weak transcription	Right Atrium	heart
16	chr7:98955600-98970200	Weak transcription	Fetal Brain Male	brain
17	chr7:98956000-98966800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr7:98956200-98970400	Weak transcription	Stomach Mucosa	stomach
19	chr7:98956600-98967200	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr7:98957000-98966600	Strong transcription	Brain Hippocampus Middle	brain
21	chr7:98958200-98970000	Weak transcription	Fetal Heart	heart
22	chr7:98959400-98970400	Weak transcription	Psoas Muscle	Psoas
23	chr7:98959400-98971600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:98960800-98967200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:98960800-98968600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:98961200-98966800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:98961200-98967400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:98961200-98971600	Weak transcription	Small Intestine	intestine
29	chr7:98961800-98967400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:98962200-98971600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:98962800-98967200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:98962800-98970000	Weak transcription	Fetal Kidney	kidney
33	chr7:98962800-98971400	Weak transcription	Primary B cells from cord blood	blood
34	chr7:98964200-98970000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr7:98964400-98969000	Weak transcription	HepG2	liver
36	chr7:98964400-98970000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:98964400-98970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr7:98964600-98967600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr7:98964600-98969200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr7:98964600-98970000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:98964600-98970600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:98964600-98971600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:98964600-98971600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:98964800-98970200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:98964800-98971400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr7:98964800-98971400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:98965000-98966600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:98965000-98966600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:98965000-98967200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:98965000-98967800	Weak transcription	NHLF	lung

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