Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10046490	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10085823	1.00[MEX][hapmap]
rs10155956	0.81[AMR][1000 genomes]
rs10228787	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes]
rs10237212	0.87[ASW][hapmap];1.00[MEX][hapmap];0.80[YRI][hapmap]
rs10240258	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242241	0.87[ASW][hapmap]
rs10247946	0.87[ASW][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs10263954	0.81[AMR][1000 genomes]
rs10264303	1.00[MEX][hapmap]
rs10277362	1.00[MEX][hapmap]
rs10281195	0.82[ASW][hapmap]
rs11505837	0.90[AMR][1000 genomes]
rs11505838	0.90[AMR][1000 genomes]
rs11769124	0.90[AMR][1000 genomes]
rs11769461	0.88[ASW][hapmap];0.83[LWK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs17161647	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28378107	1.00[MEX][hapmap]
rs28655791	0.87[ASW][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs28754375	0.81[AMR][1000 genomes]
rs55790900	1.00[EUR][1000 genomes]
rs58728048	0.90[AMR][1000 genomes]
rs61673162	0.90[AMR][1000 genomes]
rs61747205	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs755145	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes]
rs886619	0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs940334	1.00[MEX][hapmap]
rs9656059	0.90[AMR][1000 genomes]
rs9969388	0.84[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:98875200-98886800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:98878000-98885600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:98880600-98883800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:98881000-98881200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: