Variant report

Variant	rs10228787
Chromosome Location	chr7:98912502-98912503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98910744..98913991-chr7:98921648..98925716,5	K562	blood:
2	chr7:98912186..98914014-chr7:98918114..98920707,2	MCF-7	breast:
3	chr7:98739125..98741724-chr7:98911722..98914686,2	K562	blood:
4	chr7:98912362..98913995-chr7:98921766..98923287,2	MCF-7	breast:
5	chr7:98910016..98912819-chr7:98914266..98916529,2	K562	blood:

Variant related genes	Relation type
ENSG00000241685	Chromatin interaction
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10046490	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10155956	0.90[AMR][1000 genomes]
rs10237212	0.92[YRI][hapmap];0.86[AMR][1000 genomes]
rs10240258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247946	0.90[AMR][1000 genomes]
rs10263954	0.90[AMR][1000 genomes]
rs10264582	0.82[AMR][1000 genomes]
rs10274806	0.82[AMR][1000 genomes]
rs11505837	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11505838	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769124	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11769461	1.00[YRI][hapmap]
rs17161647	1.00[CEU][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes]
rs17161650	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes]
rs28576900	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28655791	0.90[AMR][1000 genomes]
rs28754375	0.90[AMR][1000 genomes]
rs58728048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59463042	0.86[AMR][1000 genomes]
rs60971917	0.86[AMR][1000 genomes]
rs61673162	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61747205	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6962328	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs755145	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs886619	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9656059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9969388	0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98908000-98917800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98908200-98922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:98908400-98921800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:98908400-98923000	Weak transcription	Aorta	Aorta
5	chr7:98910200-98921800	Weak transcription	Right Ventricle	heart
6	chr7:98910600-98922600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:98910800-98912600	Enhancers	GM12878-XiMat	blood
8	chr7:98911000-98922400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:98911000-98922400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:98911000-98922600	Weak transcription	NHLF	lung
11	chr7:98911200-98922600	Weak transcription	Brain Substantia Nigra	brain
12	chr7:98911400-98922600	Weak transcription	A549	lung
13	chr7:98912000-98912600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:98912000-98912600	Enhancers	HMEC	breast
15	chr7:98912000-98912600	Enhancers	NHEK	skin
16	chr7:98912200-98912600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:98912200-98921800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:98912400-98912600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr7:98912400-98919000	Weak transcription	Stomach Mucosa	stomach

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