Variant report

Variant	rs10155956
Chromosome Location	chr7:98928134-98928135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98476027..98477685-chr7:98926300..98928393,2	K562	blood:
2	chr7:98926029..98929267-chr7:99005102..99007231,3	K562	blood:
3	chr7:98915839..98918656-chr7:98927635..98930198,2	MCF-7	breast:
4	chr7:98921268..98926325-chr7:98927709..98931236,6	MCF-7	breast:
5	chr7:98927030..98929384-chr7:98976181..98977844,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241685	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000196367	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10046490	0.81[AMR][1000 genomes]
rs10085823	0.86[AMR][1000 genomes]
rs10228787	0.90[AMR][1000 genomes]
rs10237212	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10240258	0.90[AMR][1000 genomes]
rs10242241	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10247946	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263954	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264582	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10274806	0.82[AMR][1000 genomes]
rs10277362	0.86[AMR][1000 genomes]
rs11505837	0.90[AMR][1000 genomes]
rs11505838	0.90[AMR][1000 genomes]
rs11769124	0.90[AMR][1000 genomes]
rs17161650	0.81[AMR][1000 genomes]
rs28378107	0.86[AMR][1000 genomes]
rs28576900	0.86[AMR][1000 genomes]
rs28655791	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28754375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58728048	0.90[AMR][1000 genomes]
rs59463042	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60971917	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61673162	0.90[AMR][1000 genomes]
rs61747205	0.86[AMR][1000 genomes]
rs6962328	0.86[AMR][1000 genomes]
rs755145	0.90[AMR][1000 genomes]
rs9656059	0.90[AMR][1000 genomes]
rs9969388	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98924400-98957200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98924600-98928200	Weak transcription	Esophagus	oesophagus
3	chr7:98924600-98929800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:98924600-98930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:98924600-98971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:98924800-98928400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:98924800-98928400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:98924800-98928400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr7:98924800-98929200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:98924800-98929200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr7:98924800-98930000	Enhancers	Stomach Mucosa	stomach
12	chr7:98924800-98930800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:98924800-98930800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:98924800-98930800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:98924800-98930800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:98924800-98930800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:98924800-98931000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:98924800-98931000	Weak transcription	Fetal Kidney	kidney
19	chr7:98924800-98932600	Weak transcription	Aorta	Aorta
20	chr7:98924800-98935600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:98924800-98935600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:98924800-98935800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:98924800-98936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:98925000-98928400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr7:98925000-98931000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:98925200-98928800	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr7:98925200-98929600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:98925200-98930800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr7:98925200-98965200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:98925400-98928400	Enhancers	Brain Germinal Matrix	brain
31	chr7:98925400-98928400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr7:98925400-98929000	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr7:98925400-98935600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:98925600-98928400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:98925600-98930200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:98925600-98931000	Weak transcription	Thymus	Thymus
37	chr7:98925600-98931200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr7:98925600-98936200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:98925800-98928200	Enhancers	HUVEC	blood vessel
40	chr7:98925800-98928400	Weak transcription	Fetal Thymus	thymus
41	chr7:98925800-98930800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:98925800-98930800	Weak transcription	Fetal Muscle Leg	muscle
43	chr7:98925800-98930800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr7:98925800-98931200	Weak transcription	Gastric	stomach
45	chr7:98925800-98933600	Weak transcription	Colonic Mucosa	Colon
46	chr7:98926000-98931000	Weak transcription	Fetal Brain Male	brain
47	chr7:98926200-98929200	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr7:98926200-98929200	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr7:98926200-98930800	Weak transcription	Liver	Liver
50	chr7:98926200-98931200	Weak transcription	Brain Cingulate Gyrus	brain

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