Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98885391..98886952-chr7:98888509..98890227,2	K562	blood:
2	chr7:98883658..98885760-chr7:98921879..98924548,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241685	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10046490	0.85[AMR][1000 genomes]
rs10155956	0.86[AMR][1000 genomes]
rs10228787	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs10237212	0.82[AMR][1000 genomes]
rs10240258	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10247946	0.86[AMR][1000 genomes]
rs10263954	0.86[AMR][1000 genomes]
rs11505837	0.95[AMR][1000 genomes]
rs11505838	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11769124	0.95[AMR][1000 genomes]
rs11769461	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17161647	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161650	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28576900	0.82[AMR][1000 genomes]
rs28655791	0.86[AMR][1000 genomes]
rs28754375	0.86[AMR][1000 genomes]
rs55790900	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58728048	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs59463042	0.82[AMR][1000 genomes]
rs60971917	0.82[AMR][1000 genomes]
rs61673162	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6962328	0.82[AMR][1000 genomes]
rs755145	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs886619	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9656059	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs9969388	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:98875200-98886800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:98881200-98899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:98885600-98885800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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