Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10046490	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10155956	0.90[AMR][1000 genomes]
rs10228787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10237212	0.86[AMR][1000 genomes]
rs10240258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247946	0.90[AMR][1000 genomes]
rs10263954	0.90[AMR][1000 genomes]
rs10264582	0.82[AMR][1000 genomes]
rs10274806	0.82[AMR][1000 genomes]
rs11505837	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11505838	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769124	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17161647	0.86[AMR][1000 genomes]
rs17161650	0.90[AMR][1000 genomes]
rs28576900	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28655791	0.90[AMR][1000 genomes]
rs28754375	0.90[AMR][1000 genomes]
rs58728048	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59463042	0.86[AMR][1000 genomes]
rs60971917	0.86[AMR][1000 genomes]
rs61673162	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61747205	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6962328	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs755145	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs886619	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9969388	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
2	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:98881200-98899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:98890800-98905800	Weak transcription	Pancreas	Pancrea
6	chr7:98893200-98906600	Weak transcription	Fetal Intestine Small	intestine
7	chr7:98893800-98906000	Weak transcription	HMEC	breast

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