Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr7:98899272-98899348	MCF-7	breast:	n/a	n/a
2	ELF1	chr7:98899165-98899449	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98899191..98901926-chr7:98970485..98972382,2	MCF-7	breast:

Variant related genes	Relation type
MYH16	TF binding region
ENSG00000130429	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10046490	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10155956	0.90[AMR][1000 genomes]
rs10228787	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10237212	0.86[AMR][1000 genomes]
rs10240258	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247946	0.90[AMR][1000 genomes]
rs10263954	0.90[AMR][1000 genomes]
rs10264582	0.82[AMR][1000 genomes]
rs10274806	0.82[AMR][1000 genomes]
rs11505837	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11505838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769124	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11769461	0.84[AFR][1000 genomes]
rs17161647	0.86[AMR][1000 genomes]
rs17161650	0.90[AMR][1000 genomes]
rs28576900	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28655791	0.90[AMR][1000 genomes]
rs28754375	0.90[AMR][1000 genomes]
rs58728048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59463042	0.86[AMR][1000 genomes]
rs60971917	0.86[AMR][1000 genomes]
rs61747205	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6962328	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs755145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs886619	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9656059	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9969388	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:98890800-98905800	Weak transcription	Pancreas	Pancrea
4	chr7:98893200-98906600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:98893800-98906000	Weak transcription	HMEC	breast
6	chr7:98897200-98903200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:98899000-98899400	Enhancers	Gastric	stomach
8	chr7:98899200-98899400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:98899200-98899400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:98899200-98899400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:98899200-98907800	Weak transcription	Aorta	Aorta

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