Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:98667554..98669412-chr7:98906723..98909530,2	MCF-7	breast:
2	chr7:98905002..98907882-chr7:98909240..98911791,4	K562	blood:
3	chr7:98877977..98879856-chr7:98906028..98908082,2	MCF-7	breast:
4	chr7:98863715..98866247-chr7:98906796..98908535,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10155956	0.81[AMR][1000 genomes]
rs10228787	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10240258	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10242241	0.89[AMR][1000 genomes]
rs10247946	0.81[AMR][1000 genomes]
rs10263954	0.81[AMR][1000 genomes]
rs11505837	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11505838	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769124	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17161650	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28576900	0.88[EUR][1000 genomes]
rs28655791	0.81[AMR][1000 genomes]
rs28754375	0.81[AMR][1000 genomes]
rs58728048	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61673162	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61747205	0.85[AMR][1000 genomes]
rs6962328	0.88[EUR][1000 genomes]
rs755145	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656059	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9969388	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98899200-98907800	Weak transcription	Aorta	Aorta
2	chr7:98903800-98910400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:98906200-98907800	Weak transcription	A549	lung
4	chr7:98906200-98908000	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:98906400-98910200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:98906800-98907800	ZNF genes & repeats	HMEC	breast
7	chr7:98906800-98908600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr7:98906800-98912000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:98907200-98908200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:98907200-98910400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:98907400-98908400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:98907400-98909200	Weak transcription	Stomach Mucosa	stomach
13	chr7:98907600-98907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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