Variant report

Variant	rs10237212
Chromosome Location	chr7:98920319-98920320
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98739456..98741292-chr7:98918688..98921036,2	MCF-7	breast:
2	chr7:98915217..98917210-chr7:98919923..98922724,2	K562	blood:
3	chr7:98912186..98914014-chr7:98918114..98920707,2	MCF-7	breast:
4	chr7:98852104..98853933-chr7:98919430..98921281,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10085823	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs10155956	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10228787	0.92[YRI][hapmap];0.86[AMR][1000 genomes]
rs10240258	0.86[AMR][1000 genomes]
rs10242241	1.00[ASW][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10247946	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10263954	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10264303	1.00[MEX][hapmap]
rs10264582	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10277362	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs11505837	0.86[AMR][1000 genomes]
rs11505838	0.86[AMR][1000 genomes]
rs11761528	1.00[CEU][hapmap]
rs11769124	0.86[AMR][1000 genomes]
rs11769461	0.92[YRI][hapmap]
rs17161647	0.80[YRI][hapmap]
rs17161650	0.87[ASW][hapmap];1.00[MEX][hapmap];0.80[YRI][hapmap]
rs28378107	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs28576900	0.82[AMR][1000 genomes]
rs28655791	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28754375	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58728048	0.86[AMR][1000 genomes]
rs59463042	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60971917	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61673162	0.86[AMR][1000 genomes]
rs61747205	0.82[AMR][1000 genomes]
rs6962328	0.82[AMR][1000 genomes]
rs755145	1.00[MEX][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes]
rs886619	0.92[YRI][hapmap]
rs940334	1.00[MEX][hapmap]
rs9656059	0.86[AMR][1000 genomes]
rs9969388	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98908200-98922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:98908400-98921800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:98908400-98923000	Weak transcription	Aorta	Aorta
4	chr7:98910200-98921800	Weak transcription	Right Ventricle	heart
5	chr7:98910600-98922600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:98911000-98922400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:98911000-98922400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:98911000-98922600	Weak transcription	NHLF	lung
9	chr7:98911200-98922600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:98911400-98922600	Weak transcription	A549	lung
11	chr7:98912200-98921800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:98912600-98921800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:98912600-98922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:98915000-98922600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:98918600-98921800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:98918600-98922200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:98918600-98922400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:98918600-98922400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:98918600-98922400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:98918600-98922400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:98918600-98922600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:98918800-98922400	Weak transcription	Fetal Intestine Small	intestine
23	chr7:98919000-98922400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:98919400-98922600	Weak transcription	Stomach Mucosa	stomach
25	chr7:98919800-98920400	Enhancers	Left Ventricle	heart
26	chr7:98920000-98922600	Weak transcription	Fetal Heart	heart
27	chr7:98920000-98922600	Weak transcription	HUVEC	blood vessel

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