Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98873425..98876487-chr7:98877048..98879908,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10228787	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10237212	0.92[YRI][hapmap]
rs10240258	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11505837	0.86[AMR][1000 genomes]
rs11505838	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11769124	0.86[AMR][1000 genomes]
rs11769461	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17161640	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17161647	0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17161650	0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55790900	0.83[EUR][1000 genomes]
rs57185355	0.89[ASN][1000 genomes]
rs57681433	0.89[ASN][1000 genomes]
rs58728048	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs60612724	0.82[ASN][1000 genomes]
rs61673162	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61747205	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs755145	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7806818	0.89[ASN][1000 genomes]
rs9656059	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9969388	0.92[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98872000-98875000	Weak transcription	Gastric	stomach
4	chr7:98872200-98874800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:98872600-98876400	Weak transcription	Fetal Intestine Large	intestine
6	chr7:98873200-98874800	Weak transcription	Stomach Mucosa	stomach
7	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:98874400-98874800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:98874400-98874800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr7:98874400-98875000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:98874400-98875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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