Variant report

Variant	rs10257790
Chromosome Location	chr7:25147000-25147001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10275616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28563070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28734135	0.88[AFR][1000 genomes]
rs28828451	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28828518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28851776	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25133000-25156400	Weak transcription	Right Atrium	heart
2	chr7:25146400-25148400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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