Variant report

Variant	rs28563070
Chromosome Location	chr7:25152897-25152898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25100415..25102088-chr7:25152079..25154368,2	K562	blood:
2	chr7:25142001..25144509-chr7:25152189..25155533,4	K562	blood:
3	chr7:25150657..25153569-chr7:25155939..25157650,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10257790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28734135	0.88[AFR][1000 genomes]
rs28828451	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28828518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28851776	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25133000-25156400	Weak transcription	Right Atrium	heart
2	chr7:25149200-25157200	Weak transcription	A549	lung
3	chr7:25150400-25158600	Weak transcription	NHEK	skin
4	chr7:25150800-25158800	Weak transcription	Primary T cells from cord blood	blood
5	chr7:25151000-25158600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:25151200-25157800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:25151400-25158800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:25151400-25159400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:25151800-25153000	Enhancers	Osteobl	bone
10	chr7:25152200-25156000	Weak transcription	GM12878-XiMat	blood
11	chr7:25152200-25157600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:25152200-25157800	Weak transcription	NHLF	lung
13	chr7:25152200-25158400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:25152200-25158400	Weak transcription	NH-A	brain
15	chr7:25152200-25159400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:25152200-25163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:25152400-25155600	Weak transcription	HSMMtube	muscle
18	chr7:25152400-25158000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:25152400-25158400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:25152800-25153000	Enhancers	Left Ventricle	heart
21	chr7:25152800-25153000	Enhancers	Hela-S3	cervix
22	chr7:25152800-25153200	Enhancers	Stomach Mucosa	stomach
23	chr7:25152800-25153400	Enhancers	K562	blood
24	chr7:25152800-25153600	Enhancers	Fetal Intestine Small	intestine

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