Variant report

Variant	rs28682879
Chromosome Location	chr7:25135517-25135518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10257790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275616	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279024	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28563070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28734135	0.84[AFR][1000 genomes]
rs28828451	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28828518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28851776	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25133000-25156400	Weak transcription	Right Atrium	heart
2	chr7:25134000-25136000	Weak transcription	Fetal Intestine Large	intestine
3	chr7:25134000-25138000	Weak transcription	Osteobl	bone
4	chr7:25134400-25137400	Weak transcription	A549	lung
5	chr7:25134400-25138000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:25135400-25135600	Enhancers	HUVEC	blood vessel
7	chr7:25135400-25135800	Weak transcription	Liver	Liver
8	chr7:25135400-25135800	Enhancers	Hela-S3	cervix
9	chr7:25135400-25136000	Flanking Active TSS	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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