Variant report

Variant	rs28376346
Chromosome Location	chr7:25162919-25162920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25063807..25065550-chr7:25161295..25162943,2	K562	blood:
2	chr7:25162226..25166939-chr7:25217425..25223469,13	K562	blood:
3	chr7:25162308..25164460-chr7:25245338..25246986,2	K562	blood:
4	chr7:24860077..24861598-chr7:25162412..25164034,2	K562	blood:
5	chr7:25138333..25140048-chr7:25162393..25164848,2	MCF-7	breast:
6	chr18:3262951..3265530-chr7:25162407..25164968,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153790	Chromatin interaction
ENSG00000118680	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10257790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28563070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28734135	0.88[AFR][1000 genomes]
rs28828451	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28828518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28851776	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv970453	chr7:25161936-25164107	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25152200-25163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:25153200-25163600	Weak transcription	Stomach Mucosa	stomach
3	chr7:25155600-25163400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:25156600-25163400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:25156600-25163400	Weak transcription	Right Atrium	heart
6	chr7:25156600-25164000	Weak transcription	Esophagus	oesophagus
7	chr7:25156600-25164000	Weak transcription	Spleen	Spleen
8	chr7:25157200-25163800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:25157800-25163400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:25157800-25163400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:25157800-25163400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:25157800-25163600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:25157800-25163800	Weak transcription	Brain Angular Gyrus	brain
14	chr7:25157800-25164000	Weak transcription	Pancreas	Pancrea
15	chr7:25158200-25163400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:25158400-25163000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:25158400-25163400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:25158400-25163400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:25158600-25163400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:25158800-25163400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:25158800-25163400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr7:25159200-25163000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:25159200-25163000	Strong transcription	Adipose Nuclei	Adipose
24	chr7:25159200-25163400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr7:25160000-25163400	Strong transcription	K562	blood
26	chr7:25160600-25163800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:25160800-25163400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:25161200-25163400	Weak transcription	Fetal Brain Male	brain
29	chr7:25161400-25164000	Weak transcription	Gastric	stomach
30	chr7:25161600-25163200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr7:25161600-25163600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:25161600-25163600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:25161600-25163800	Weak transcription	Fetal Intestine Small	intestine
34	chr7:25161600-25163800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr7:25161600-25164000	Weak transcription	Ovary	ovary
36	chr7:25161600-25164200	Weak transcription	Aorta	Aorta
37	chr7:25161800-25163000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:25161800-25163000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:25161800-25163400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:25161800-25163600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr7:25161800-25163600	Weak transcription	Fetal Stomach	stomach
42	chr7:25161800-25163800	Weak transcription	Thymus	Thymus
43	chr7:25161800-25164000	Weak transcription	Lung	lung
44	chr7:25162000-25163000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:25162200-25163400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr7:25162200-25163400	Weak transcription	HSMMtube	muscle
47	chr7:25162200-25164200	Weak transcription	Small Intestine	intestine
48	chr7:25162400-25163000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:25162400-25163000	Strong transcription	Dnd41	blood
50	chr7:25162400-25163200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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