Variant report

Variant	rs28828451
Chromosome Location	chr7:25171364-25171365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25169986..25172734-chr7:25218630..25220347,2	K562	blood:
2	chr7:25171106..25174072-chr7:25174114..25176153,2	K562	blood:
3	chr7:25163436..25166237-chr7:25170575..25172310,3	K562	blood:
4	chr7:25167562..25170064-chr7:25170923..25173288,2	K562	blood:

Variant related genes	Relation type
ENSG00000153790	Chromatin interaction
ENSG00000172115	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10257790	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275616	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278815	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278937	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279024	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376346	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28563070	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682879	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28828518	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25165400-25209800	Weak transcription	Spleen	Spleen
2	chr7:25165600-25189400	Weak transcription	Lung	lung
3	chr7:25165600-25191400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:25165600-25193400	Weak transcription	Ovary	ovary
5	chr7:25165600-25213000	Weak transcription	Small Intestine	intestine
6	chr7:25165600-25218800	Weak transcription	Colonic Mucosa	Colon
7	chr7:25165600-25219200	Weak transcription	Left Ventricle	heart
8	chr7:25165800-25172200	Weak transcription	GM12878-XiMat	blood
9	chr7:25165800-25175600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:25165800-25175600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:25165800-25191200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:25165800-25191400	Weak transcription	Thymus	Thymus
13	chr7:25165800-25194400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:25165800-25200400	Weak transcription	Fetal Kidney	kidney
15	chr7:25165800-25219000	Weak transcription	Fetal Lung	lung
16	chr7:25166000-25171800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr7:25166000-25175600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:25166000-25175800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr7:25166000-25175800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:25166000-25194200	Weak transcription	Fetal Thymus	thymus
21	chr7:25166000-25218800	Weak transcription	Brain Anterior Caudate	brain
22	chr7:25166200-25171800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:25167800-25174400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:25168000-25171800	Weak transcription	K562	blood
25	chr7:25168000-25174400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr7:25168000-25206800	Weak transcription	Fetal Intestine Small	intestine
27	chr7:25168000-25218800	Weak transcription	Gastric	stomach
28	chr7:25169200-25193400	Weak transcription	Adipose Nuclei	Adipose

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