Variant report

Variant	rs10258785
Chromosome Location	chr7:99236641-99236642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:99236623-99236673	NB4	blood:	n/a
2	chr7:99236623-99236673	RPTEC	kidney:	n/a
3	chr7:99236623-99236673	GM12892	blood:	n/a
4	chr7:99236623-99236673	Hepatocyte	liver:	n/a
5	chr7:99236623-99236673	CMK	blood:	n/a
6	chr7:99236623-99236673	SK-N-SH_RA	brain:	n/a
7	chr7:99236623-99236673	GM12891	blood:	n/a
8	chr7:99236623-99236673	ECC-1	luminal epithelium:	n/a
9	chr7:99236623-99236673	HRCEpiC	kidney:	n/a
10	chr7:99236623-99236673	HPAEpiC	pulmonary alveolar:	n/a
11	chr7:99236623-99236673	Caco-2	colon:	n/a
12	chr7:99236623-99236673	BJ	skin:	n/a
13	chr7:99236623-99236673	HL-60	blood:	n/a
14	chr7:99236623-99236673	NT2-D1	testis:	n/a
15	chr7:99236623-99236673	HIPEpiC	eye:	n/a
16	chr7:99236623-99236673	HNPCEpiC	eye:	n/a
17	chr7:99236623-99236673	PANC-1	pancreas:	n/a
18	chr7:99236623-99236673	PrEC	prostate:	n/a
19	chr7:99236623-99236673	T-47D	breast:	n/a
20	chr7:99236623-99236673	MCF-7	breast:	n/a
21	chr7:99236623-99236673	HAEpiC	amniotic membrane:	n/a
22	chr7:99236623-99236673	SKMC	muscle:	n/a
23	chr7:99236623-99236673	HMEC	breast:	n/a
24	chr7:99236623-99236673	NHDF-neo	bronchial:	n/a
25	chr7:99236623-99236673	HEK293	kidney:	embryo
26	chr7:99236623-99236673	HCF	heart:	n/a
27	chr7:99236623-99236673	LNCaP	prostate:	n/a
28	chr7:99236623-99236673	Jurkat	blood:	n/a
29	chr7:99236623-99236673	AG10803	skin:	n/a
30	chr7:99236623-99236673	AG09319	gingival:	n/a
31	chr7:99236623-99236673	HCPEpiC	choroid plexus:	n/a
32	chr7:99236623-99236673	A549	lung:	n/a
33	chr7:99236623-99236673	IMR90	lung:	fetal
34	chr7:99236623-99236673	SK-N-SH	brain:	n/a
35	chr7:99236623-99236673	GM06990	blood:	n/a
36	chr7:99236623-99236673	HRPEpiC	eye:	n/a
37	chr7:99236623-99236673	NH-A	brain:	n/a
38	chr7:99236623-99236673	NHBE	bronchial:	n/a
39	chr7:99236623-99236673	SK-N-MC	brain:	n/a
40	chr7:99236623-99236673	SAEC	small airway:	n/a
41	chr7:99236623-99236673	HCT-116	colon:	n/a
42	chr7:99236623-99236673	K562	blood:	n/a
43	chr7:99236623-99236673	AG09309	skin:	n/a
44	chr7:99236623-99236673	Hela-S3	cervix:	n/a
45	chr7:99236623-99236673	GM19239	blood:	n/a
46	chr7:99236623-99236673	HUVEC	blood vessel:	n/a
47	chr7:99236623-99236673	H1-hESC	embryonic stem cell:	embryo
48	chr7:99236623-99236673	HepG2	liver:	n/a
49	chr7:99236623-99236673	HEEpiC	esophagus:	n/a
50	chr7:99236623-99236673	ProgFib	skin:	n/a

No data

Variant related genes	Relation type
ENSG00000224448	CpG island

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10215758	0.83[AFR][1000 genomes]
rs10234586	0.83[AFR][1000 genomes]
rs10249095	0.83[AFR][1000 genomes]
rs10258918	0.83[AFR][1000 genomes]
rs10260157	0.83[AFR][1000 genomes]
rs10260896	0.83[AFR][1000 genomes]
rs10268692	0.83[AFR][1000 genomes]
rs10274078	0.83[AFR][1000 genomes]
rs10274095	0.83[AFR][1000 genomes]
rs10275948	0.83[AFR][1000 genomes]
rs28390670	0.83[AFR][1000 genomes]
rs28621023	0.83[AFR][1000 genomes]
rs28728155	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99224000-99241800	Weak transcription	HSMMtube	muscle
2	chr7:99225400-99243000	Weak transcription	Fetal Brain Male	brain
3	chr7:99225800-99241800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:99228200-99244200	Weak transcription	Psoas Muscle	Psoas
5	chr7:99228400-99258000	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:99228400-99258800	Weak transcription	Ovary	ovary
7	chr7:99228800-99249000	Weak transcription	Small Intestine	intestine
8	chr7:99229200-99241600	Weak transcription	Brain Angular Gyrus	brain
9	chr7:99229200-99242000	Weak transcription	NHDF-Ad	bronchial
10	chr7:99229200-99243200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:99229200-99267400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:99229200-99275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:99229400-99236800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:99229400-99257400	Weak transcription	Fetal Lung	lung
15	chr7:99229400-99257800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:99229800-99241200	Weak transcription	Aorta	Aorta
17	chr7:99229800-99255400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:99229800-99257200	Weak transcription	Esophagus	oesophagus
19	chr7:99229800-99257600	Weak transcription	Pancreas	Pancrea
20	chr7:99229800-99260200	Weak transcription	Left Ventricle	heart
21	chr7:99229800-99272600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr7:99230200-99243000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:99230200-99257200	Weak transcription	Gastric	stomach
24	chr7:99230400-99241800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:99230400-99243800	Weak transcription	NHLF	lung
26	chr7:99230400-99249000	Weak transcription	Colonic Mucosa	Colon
27	chr7:99230400-99257600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:99230400-99272000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:99230600-99243400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:99230800-99241600	Weak transcription	Liver	Liver
31	chr7:99230800-99243200	Weak transcription	Thymus	Thymus
32	chr7:99230800-99258000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:99231400-99241200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:99231400-99248800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:99231600-99237000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr7:99231600-99241400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:99231600-99252400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr7:99231800-99241000	Weak transcription	Fetal Brain Female	brain
39	chr7:99231800-99241200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:99231800-99241200	Weak transcription	Adipose Nuclei	Adipose
41	chr7:99231800-99242600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:99231800-99243000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:99231800-99245000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr7:99231800-99246600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr7:99231800-99247400	Weak transcription	Brain Hippocampus Middle	brain
46	chr7:99231800-99247800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr7:99231800-99250000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:99231800-99258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:99231800-99258000	Weak transcription	Brain Substantia Nigra	brain
50	chr7:99231800-99260200	Weak transcription	K562	blood

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