Variant report

Variant	rs10260896
Chromosome Location	chr7:99137274-99137275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99135635..99139067-chr7:99212992..99216065,4	K562	blood:
2	chr7:99137076..99138683-chr7:99212899..99214492,2	K562	blood:
3	chr7:99136505..99140144-chr7:99147711..99149995,4	K562	blood:
4	chr7:99134801..99138678-chr7:99148082..99150721,4	MCF-7	breast:
5	chr7:99129008..99131718-chr7:99137131..99141580,3	K562	blood:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction
ENSG00000221909	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10215758	1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224128	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229716	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10234586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10247656	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255749	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258785	0.83[AFR][1000 genomes]
rs10258918	1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274095	1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281981	0.90[LWK][hapmap];0.83[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28365076	1.00[MEX][hapmap]
rs28390670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569855	1.00[MEX][hapmap]
rs28621023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41301652	0.91[AFR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99130200-99138200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:99130200-99138200	Weak transcription	Hela-S3	cervix
3	chr7:99131400-99138200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:99131600-99138000	Weak transcription	Brain Substantia Nigra	brain
5	chr7:99131600-99138200	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:99131600-99138200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:99131600-99138200	Weak transcription	Left Ventricle	heart
8	chr7:99131600-99138200	Weak transcription	Ovary	ovary
9	chr7:99131600-99138200	Weak transcription	HSMMtube	muscle
10	chr7:99131600-99140600	Weak transcription	Right Ventricle	heart
11	chr7:99131800-99144000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:99132600-99140800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:99132600-99148600	Weak transcription	Brain Angular Gyrus	brain
14	chr7:99132800-99138000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:99132800-99138000	Weak transcription	Brain Anterior Caudate	brain
16	chr7:99132800-99138200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:99133000-99138000	Weak transcription	Fetal Brain Female	brain
18	chr7:99133800-99145000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:99135000-99137400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:99136000-99137800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:99137000-99137400	Enhancers	HepG2	liver
22	chr7:99137000-99137400	Enhancers	K562	blood

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