Variant report

Variant	rs10268692
Chromosome Location	chr7:99116048-99116049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99108990..99112494-chr7:99114125..99117489,4	K562	blood:
2	chr7:99109545..99112494-chr7:99114125..99117020,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10215758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224128	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229716	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10234586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10247656	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10251931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255749	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258785	0.83[AFR][1000 genomes]
rs10258918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28390670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28621023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41301652	0.91[AFR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99103800-99125600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:99104200-99118600	Weak transcription	Right Atrium	heart
3	chr7:99104200-99123000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:99105000-99126000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:99105000-99126400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:99105000-99128000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:99105000-99128000	Weak transcription	Fetal Heart	heart
8	chr7:99105000-99128800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:99105000-99129400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:99105400-99125400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:99105400-99126200	Weak transcription	Stomach Mucosa	stomach
12	chr7:99105600-99124400	Weak transcription	Psoas Muscle	Psoas
13	chr7:99107000-99119600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:99107000-99126000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:99107400-99116200	Strong transcription	Placenta	Placenta
16	chr7:99107400-99118400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:99107400-99118800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:99107400-99126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:99107600-99126000	Strong transcription	Fetal Stomach	stomach
20	chr7:99107800-99118800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr7:99108200-99118600	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr7:99108400-99118000	Strong transcription	Primary T cells from cord blood	blood
23	chr7:99108400-99118600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:99108400-99126000	Strong transcription	Fetal Thymus	thymus
25	chr7:99108600-99116200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:99108600-99118400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr7:99108600-99125200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:99108600-99126200	Strong transcription	Dnd41	blood
29	chr7:99109200-99116200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:99110000-99118600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr7:99110000-99121000	Strong transcription	Fetal Intestine Large	intestine
32	chr7:99110400-99122400	Weak transcription	Right Ventricle	heart
33	chr7:99111200-99117600	Weak transcription	Hela-S3	cervix
34	chr7:99111800-99123400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:99112200-99117200	Weak transcription	K562	blood
36	chr7:99112200-99121200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:99112200-99123600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:99112400-99127400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:99112600-99116200	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr7:99112600-99117800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr7:99112800-99118200	Strong transcription	Lung	lung
42	chr7:99113000-99118600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:99113200-99127800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:99113600-99116200	Strong transcription	Adipose Nuclei	Adipose
45	chr7:99113600-99116200	Strong transcription	Brain Substantia Nigra	brain
46	chr7:99113600-99125600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:99113800-99116200	Strong transcription	NHLF	lung
48	chr7:99113800-99118600	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr7:99114400-99123000	Weak transcription	Colonic Mucosa	Colon
50	chr7:99114600-99117000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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