Variant report

Variant	rs10232946
Chromosome Location	chr7:98936432-98936433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98935181..98936686-chr7:98946669..98948987,2	MCF-7	breast:
2	chr7:98921929..98925075-chr7:98932538..98936577,3	MCF-7	breast:
3	chr7:98934262..98936878-chr7:98938808..98941146,2	K562	blood:

Variant related genes	Relation type
ENSG00000241685	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10215758	1.00[AMR][1000 genomes]
rs10231045	1.00[AMR][1000 genomes]
rs10234586	1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10237782	1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10254863	1.00[AMR][1000 genomes]
rs10258918	1.00[AMR][1000 genomes]
rs10260157	1.00[AMR][1000 genomes]
rs10260896	1.00[AMR][1000 genomes]
rs10268692	1.00[AMR][1000 genomes]
rs10273355	1.00[AMR][1000 genomes]
rs10274078	1.00[AMR][1000 genomes]
rs10274095	1.00[AMR][1000 genomes]
rs10274601	1.00[AMR][1000 genomes]
rs10281981	1.00[AMR][1000 genomes]
rs28609333	1.00[AMR][1000 genomes]
rs28621023	1.00[AMR][1000 genomes]
rs6977564	1.00[AMR][1000 genomes]
rs7779190	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98924400-98957200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98924600-98971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:98925200-98965200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:98926600-98941600	Weak transcription	Psoas Muscle	Psoas
5	chr7:98927200-98966800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:98927600-98944200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:98927800-98960600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:98928200-98938600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:98928400-98967200	Strong transcription	Fetal Thymus	thymus
10	chr7:98928600-98965200	Strong transcription	Dnd41	blood
11	chr7:98929000-98965600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:98929400-98938600	Strong transcription	K562	blood
13	chr7:98929400-98965200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:98929600-98938600	Strong transcription	GM12878-XiMat	blood
15	chr7:98929600-98962800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr7:98929600-98965400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:98929800-98965000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr7:98930000-98950200	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr7:98930000-98962800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:98930000-98968200	Strong transcription	Fetal Intestine Small	intestine
21	chr7:98930200-98936800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:98930200-98954600	Weak transcription	Fetal Heart	heart
23	chr7:98930200-98968400	Strong transcription	Fetal Stomach	stomach
24	chr7:98930400-98938600	Strong transcription	Fetal Intestine Large	intestine
25	chr7:98930600-98938600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:98930600-98938600	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:98930600-98946000	Strong transcription	Osteobl	bone
28	chr7:98930600-98950400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:98930600-98965200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr7:98930600-98965200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr7:98930600-98965200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:98930800-98938600	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:98930800-98938600	Strong transcription	Brain Germinal Matrix	brain
34	chr7:98930800-98938600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr7:98930800-98938800	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr7:98930800-98938800	Strong transcription	Liver	Liver
37	chr7:98930800-98950000	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:98930800-98955200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:98930800-98960200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:98930800-98965200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr7:98930800-98965200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:98930800-98965400	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr7:98930800-98966800	Strong transcription	Adipose Nuclei	Adipose
44	chr7:98930800-98967000	Strong transcription	Fetal Muscle Leg	muscle
45	chr7:98930800-98967600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr7:98931000-98937800	Strong transcription	HSMM	muscle
47	chr7:98931000-98938200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:98931000-98938200	Strong transcription	NH-A	brain
49	chr7:98931000-98938600	Strong transcription	Brain Anterior Caudate	brain
50	chr7:98931000-98939000	Strong transcription	Primary T helper cells PMA-I stimulated	--

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