Variant report

Variant	rs10254863
Chromosome Location	chr7:98824225-98824226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10237782	1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10258918	1.00[AMR][1000 genomes]
rs10274601	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281981	1.00[AMR][1000 genomes]
rs28609333	1.00[AMR][1000 genomes]
rs6977564	1.00[AMR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98811000-98827600	Weak transcription	Right Atrium	heart
2	chr7:98821400-98824600	Enhancers	Stomach Mucosa	stomach
3	chr7:98822600-98826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:98822600-98827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:98822800-98826800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:98823200-98824600	Weak transcription	A549	lung
7	chr7:98823400-98826800	Weak transcription	NHEK	skin
8	chr7:98823800-98849600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:98824000-98824600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:98824200-98824600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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