Variant report

Variant	rs28609333
Chromosome Location	chr7:98727684-98727685
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98724706..98726826-chr7:98727471..98729640,2	K562	blood:
2	chr7:98718971..98721801-chr7:98724719..98728203,3	MCF-7	breast:
3	chr7:98720366..98722217-chr7:98725786..98728134,2	K562	blood:
4	chr7:98725403..98728760-chr7:98738937..98743366,4	MCF-7	breast:
5	chr7:98725984..98728681-chr7:98745631..98748345,2	MCF-7	breast:
6	chr7:98725090..98727435-chr7:98727471..98729765,3	K562	blood:
7	chr7:98725464..98728251-chr7:98738859..98741076,3	K562	blood:
8	chr7:98718671..98728659-chr7:98733886..98742869,16	K562	blood:
9	chr7:98727568..98729680-chr7:98731019..98733192,2	MCF-7	breast:
10	chr7:98709724..98711418-chr7:98726048..98728686,2	K562	blood:
11	chr7:98727310..98730186-chr7:98733337..98736321,3	MCF-7	breast:
12	chr7:98725085..98728334-chr7:98729871..98732024,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10231045	1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10237782	1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10254863	1.00[AMR][1000 genomes]
rs10274601	1.00[AMR][1000 genomes]
rs6977564	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98707200-98739400	Weak transcription	Thymus	Thymus
2	chr7:98710000-98739200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:98710400-98730400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:98714400-98730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:98714800-98739400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:98717000-98731000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:98718200-98728600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:98718200-98736400	Weak transcription	Dnd41	blood
9	chr7:98718800-98734800	Weak transcription	Fetal Brain Female	brain
10	chr7:98719800-98729600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:98721800-98731200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:98721800-98735000	Weak transcription	HSMMtube	muscle
13	chr7:98721800-98735400	Enhancers	Stomach Mucosa	stomach
14	chr7:98722000-98739600	Weak transcription	Primary B cells from cord blood	blood
15	chr7:98722200-98729400	Weak transcription	Left Ventricle	heart
16	chr7:98722200-98731400	Weak transcription	Primary T cells from cord blood	blood
17	chr7:98722200-98738600	Weak transcription	Fetal Intestine Small	intestine
18	chr7:98722400-98733000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:98722400-98739400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:98722600-98730800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:98722600-98734800	Weak transcription	Fetal Heart	heart
22	chr7:98723400-98728800	Weak transcription	Colonic Mucosa	Colon
23	chr7:98723400-98729800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:98723400-98735800	Weak transcription	Hela-S3	cervix
25	chr7:98723600-98728400	Weak transcription	Esophagus	oesophagus
26	chr7:98723600-98728400	Weak transcription	Spleen	Spleen
27	chr7:98723600-98728600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:98723600-98729800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:98723600-98735000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:98723600-98738600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:98723800-98738600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:98724400-98728600	Enhancers	Liver	Liver
33	chr7:98724400-98731000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:98724800-98728400	Weak transcription	Gastric	stomach
35	chr7:98725000-98728400	Weak transcription	Right Atrium	heart
36	chr7:98725000-98729200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:98725000-98729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:98725000-98729400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:98725000-98729600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr7:98725000-98729600	Weak transcription	Placenta	Placenta
41	chr7:98725000-98729800	Weak transcription	Right Ventricle	heart
42	chr7:98725000-98731800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:98725000-98731800	Weak transcription	Fetal Lung	lung
44	chr7:98725000-98734800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:98725000-98735000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr7:98725000-98739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr7:98725200-98729400	Weak transcription	Aorta	Aorta
48	chr7:98726000-98731400	Weak transcription	HSMM	muscle
49	chr7:98726200-98728400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:98726200-98729200	Weak transcription	Placenta Amnion	Placenta Amnion

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