Variant report

Variant	rs10248906
Chromosome Location	chr7:98865205-98865206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98863715..98866247-chr7:98906796..98908535,2	K562	blood:
2	chr7:98864488..98866115-chr7:98866989..98868742,2	K562	blood:
3	chr7:98810224..98811825-chr7:98864606..98866585,2	MCF-7	breast:
4	chr7:98854201..98855952-chr7:98864665..98866379,2	K562	blood:
5	chr7:98740682..98742383-chr7:98863261..98866237,2	MCF-7	breast:
6	chr7:98858813..98861243-chr7:98863659..98865962,2	K562	blood:
7	chr7:98862050..98865585-chr7:98869467..98873076,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction
ENSG00000002079	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10231045	1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10237782	1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10254863	1.00[AMR][1000 genomes]
rs10258918	1.00[AMR][1000 genomes]
rs10260157	1.00[AMR][1000 genomes]
rs10273355	1.00[AMR][1000 genomes]
rs10274078	1.00[AMR][1000 genomes]
rs10274095	1.00[AMR][1000 genomes]
rs10274601	1.00[AMR][1000 genomes]
rs10281981	1.00[AMR][1000 genomes]
rs28609333	1.00[AMR][1000 genomes]
rs28621023	1.00[AMR][1000 genomes]
rs6977564	1.00[AMR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98865400	Weak transcription	Aorta	Aorta
2	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
3	chr7:98863800-98871800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:98864000-98866600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:98864000-98866600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:98864000-98867000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:98864200-98866400	Enhancers	Stomach Mucosa	stomach
8	chr7:98864200-98866600	Enhancers	HepG2	liver
9	chr7:98864400-98865400	Enhancers	A549	lung
10	chr7:98864400-98866200	Enhancers	Pancreas	Pancrea
11	chr7:98864400-98866600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:98864400-98866600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:98864400-98867000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:98864400-98867400	Enhancers	HMEC	breast
15	chr7:98864400-98867400	Enhancers	NHEK	skin
16	chr7:98864600-98865400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:98864600-98865400	Enhancers	NH-A	brain
18	chr7:98864600-98866000	Enhancers	Hela-S3	cervix
19	chr7:98864600-98866200	Enhancers	NHDF-Ad	bronchial
20	chr7:98864600-98866400	Enhancers	HSMMtube	muscle
21	chr7:98864600-98866400	Enhancers	HUVEC	blood vessel
22	chr7:98864600-98866800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:98864600-98867400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:98864800-98865400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr7:98864800-98866200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:98864800-98866400	Enhancers	NHLF	lung
27	chr7:98864800-98866400	Enhancers	Osteobl	bone
28	chr7:98864800-98871600	Weak transcription	Gastric	stomach
29	chr7:98865000-98865800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:98865000-98866600	Enhancers	HSMM	muscle
31	chr7:98865200-98865400	Active TSS	Spleen	Spleen
32	chr7:98865200-98865600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:98865200-98865800	Enhancers	Fetal Brain Female	brain
34	chr7:98865200-98866400	Enhancers	Brain Angular Gyrus	brain
35	chr7:98865200-98866400	Enhancers	Brain Cingulate Gyrus	brain
36	chr7:98865200-98866400	Enhancers	Brain Substantia Nigra	brain
37	chr7:98865200-98866600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr7:98865200-98866600	Enhancers	Brain Hippocampus Middle	brain
39	chr7:98865200-98866600	Enhancers	Brain Inferior Temporal Lobe	brain

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