Variant report

Variant	rs10273355
Chromosome Location	chr7:99080011-99080012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:99079660-99080203	GM12892	blood:	n/a	n/a
2	POLR2A	chr7:99079883-99080114	MCF-7	breast:	n/a	n/a
3	POLR2A	chr7:99079575-99080151	GM12892	blood:	n/a	n/a
4	POLR2A	chr7:99079866-99080138	K562	blood:	n/a	n/a
5	POLR2A	chr7:99079686-99080093	GM12891	blood:	n/a	n/a
6	POLR2A	chr7:99079695-99080595	GM12892	blood:	n/a	n/a
7	POLR2A	chr7:99079675-99080334	GM12878	blood:	n/a	n/a
8	POLR2A	chr7:99079700-99080132	GM12892	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99076875..99080200-chr7:99096224..99098746,3	MCF-7	breast:
2	chr7:99078176..99080245-chr7:99100988..99102755,2	K562	blood:
3	chr7:99070549..99074806-chr7:99079713..99086160,8	K562	blood:
4	chr7:99078176..99080245-chr7:99100988..99102755,3	K562	blood:
5	chr7:99036051..99038082-chr7:99079952..99081854,3	K562	blood:

No data

Variant related genes	Relation type
ZNF789	TF binding region
ENSG00000198556	Chromatin interaction
ENSG00000160908	Chromatin interaction
ENSG00000196652	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000106246	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10215758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231045	1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10234586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10247656	1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10249095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10251931	1.00[AMR][1000 genomes]
rs10255749	1.00[AMR][1000 genomes]
rs10258918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259330	1.00[AMR][1000 genomes]
rs10260157	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268692	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274078	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274601	1.00[AMR][1000 genomes]
rs10275948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276684	1.00[AMR][1000 genomes]
rs10281981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28390670	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446099	1.00[AMR][1000 genomes]
rs28621023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41301652	0.82[AFR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3435734	chr7:99079779-99081407	Strong transcription Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99071200-99091000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:99071200-99091600	Weak transcription	Small Intestine	intestine
3	chr7:99071400-99081600	Weak transcription	Right Ventricle	heart
4	chr7:99071400-99090400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:99071400-99090600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:99071400-99090600	Weak transcription	Right Atrium	heart
7	chr7:99071400-99096200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:99071600-99090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:99071600-99091200	Weak transcription	Fetal Heart	heart
10	chr7:99071800-99080200	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:99071800-99081800	Weak transcription	Pancreas	Pancrea
12	chr7:99071800-99084400	Weak transcription	Fetal Brain Male	brain
13	chr7:99071800-99088600	Weak transcription	Brain Substantia Nigra	brain
14	chr7:99071800-99090400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:99071800-99090400	Weak transcription	Brain Angular Gyrus	brain
16	chr7:99071800-99090400	Weak transcription	Psoas Muscle	Psoas
17	chr7:99071800-99090600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:99071800-99091600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:99072000-99086400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:99072400-99083600	Weak transcription	Stomach Mucosa	stomach
21	chr7:99072600-99091200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:99073200-99082200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:99073600-99080200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:99073600-99080600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:99073600-99084400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:99073800-99080200	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:99073800-99080200	Strong transcription	A549	lung
28	chr7:99073800-99081600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:99073800-99083800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:99073800-99085000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr7:99074000-99080200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:99074000-99080200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:99074000-99080200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:99074000-99080200	Strong transcription	Osteobl	bone
35	chr7:99074000-99083600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:99074000-99084600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:99074000-99090400	Weak transcription	Colonic Mucosa	Colon
38	chr7:99074200-99080800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:99074600-99083200	Strong transcription	Dnd41	blood
40	chr7:99075400-99083200	Strong transcription	Fetal Brain Female	brain
41	chr7:99075600-99080200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:99075600-99080600	Strong transcription	Liver	Liver
43	chr7:99076000-99084400	Weak transcription	Fetal Kidney	kidney
44	chr7:99076400-99081600	Weak transcription	Aorta	Aorta
45	chr7:99076600-99081600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:99076600-99085400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr7:99076600-99090400	Weak transcription	Lung	lung
48	chr7:99076800-99080600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr7:99076800-99081800	Weak transcription	Gastric	stomach
50	chr7:99076800-99083000	Strong transcription	K562	blood

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