Variant report

Variant	rs10215758
Chromosome Location	chr7:99101121-99101122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr7:99100999-99101267	HepG2	liver:	n/a	n/a
2	MAFK	chr7:99101038-99101216	IMR90	lung:	n/a	n/a
3	MAFK	chr7:99101081-99101237	Hela-S3	cervix:	n/a	n/a
4	MAFF	chr7:99101066-99101268	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99061426..99063695-chr7:99100642..99102156,2	K562	blood:
2	chr7:99100982..99104119-chr7:99213088..99215201,3	K562	blood:
3	chr7:99101000..99104995-chr7:99153806..99158171,7	K562	blood:
4	chr7:99055033..99067556-chr7:99095016..99105645,21	K562	blood:
5	chr7:99096043..99099398-chr7:99100534..99104285,13	MCF-7	breast:
6	chr7:99005276..99007163-chr7:99100557..99104017,3	K562	blood:
7	chr7:99068815..99072356-chr7:99100086..99103806,3	MCF-7	breast:
8	chr7:99062251..99065366-chr7:99100921..99104362,4	MCF-7	breast:
9	chr7:99062282..99063948-chr7:99101006..99103756,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF394	TF binding region
ZKSCAN5	TF binding region
ENSG00000198556	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000272647	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000248919	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000197343	Chromatin interaction
ENSG00000160908	Chromatin interaction
ENSG00000241468	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10224128	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229716	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10234586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10247656	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10251931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255749	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258785	0.83[AFR][1000 genomes]
rs10258918	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260896	1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274095	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281981	0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28390670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569855	1.00[MEX][hapmap]
rs28621023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41301652	0.91[AFR][1000 genomes]
rs7779190	1.00[MKK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99098600-99101600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:99098600-99101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:99098600-99101800	Weak transcription	Colonic Mucosa	Colon
4	chr7:99098600-99101800	Weak transcription	Ovary	ovary
5	chr7:99098600-99101800	Weak transcription	Right Atrium	heart
6	chr7:99098600-99101800	Weak transcription	NH-A	brain
7	chr7:99098800-99101400	Weak transcription	Thymus	Thymus
8	chr7:99098800-99101600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:99098800-99101600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:99098800-99101600	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:99098800-99101600	Weak transcription	Psoas Muscle	Psoas
12	chr7:99098800-99101600	Weak transcription	Right Ventricle	heart
13	chr7:99098800-99101600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:99098800-99101600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:99098800-99101600	Weak transcription	Stomach Mucosa	stomach
16	chr7:99098800-99101800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:99098800-99101800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr7:99098800-99101800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:99098800-99101800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:99098800-99101800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:99098800-99101800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:99098800-99101800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:99098800-99101800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:99098800-99101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:99098800-99101800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:99098800-99101800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:99098800-99101800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:99098800-99101800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:99098800-99101800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr7:99098800-99101800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:99098800-99101800	Weak transcription	Primary B cells from cord blood	blood
32	chr7:99098800-99101800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:99098800-99101800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:99098800-99101800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:99098800-99101800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:99098800-99101800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:99098800-99101800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:99098800-99101800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:99098800-99101800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:99098800-99101800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:99098800-99101800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:99098800-99101800	Weak transcription	Brain Angular Gyrus	brain
43	chr7:99098800-99101800	Weak transcription	Brain Anterior Caudate	brain
44	chr7:99098800-99101800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr7:99098800-99101800	Weak transcription	Brain Germinal Matrix	brain
46	chr7:99098800-99101800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:99098800-99101800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:99098800-99101800	Weak transcription	Brain Substantia Nigra	brain
49	chr7:99098800-99101800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:99098800-99101800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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