Variant report

Variant	rs10251931
Chromosome Location	chr7:99199659-99199660
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:99199632-99199914	K562	blood:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
2	CTCF	chr7:99199566-99199974	HepG2	liver:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
3	CTCF	chr7:99199580-99199730	HCT-116	colon:	n/a	chr7:99199703-99199724
4	CTCF	chr7:99199619-99199963	H1-hESC	embryonic stem cell:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
5	CTCF	chr7:99199586-99200015	H1-hESC	embryonic stem cell:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
6	CTCF	chr7:99199640-99199790	HCT-116	colon:	n/a	chr7:99199703-99199724
7	CTCF	chr7:99199600-99199750	GM12874	blood:	n/a	chr7:99199703-99199724
8	MAX	chr7:99199561-99199868	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr7:99199618-99200050	MCF-7	breast:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
10	CTCF	chr7:99199620-99199770	MCF-7	breast:	n/a	chr7:99199703-99199724
11	RAD21	chr7:99199601-99199944	H1-hESC	embryonic stem cell:	n/a	chr7:99199803-99199812 chr7:99199798-99199812 chr7:99199796-99199808 chr7:99199794-99199813
12	CTCF	chr7:99199520-99199670	GM12864	blood:	n/a	n/a
13	CTCF	chr7:99199640-99199790	GM12869	blood:	n/a	chr7:99199703-99199724
14	CTCF	chr7:99199560-99199710	BE2_C	brain:	n/a	n/a
15	CTCF	chr7:99199506-99200050	MCF-7	breast:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
16	CTCF	chr7:99199608-99199892	K562	blood:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
17	CTCF	chr7:99199553-99199989	HCT-116	colon:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
18	CTCF	chr7:99199580-99199830	HFF-Myc	foreskin:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
19	RAD21	chr7:99199601-99199973	H1-hESC	embryonic stem cell:	n/a	chr7:99199803-99199812 chr7:99199798-99199812 chr7:99199796-99199808 chr7:99199794-99199813
20	CTCF	chr7:99199607-99199927	K562	blood:	n/a	chr7:99199797-99199813 chr7:99199703-99199724 chr7:99199791-99199812 chr7:99199796-99199814 chr7:99199798-99199811
21	RAD21	chr7:99199544-99200021	H1-hESC	embryonic stem cell:	n/a	chr7:99199803-99199812 chr7:99199798-99199812 chr7:99199796-99199808 chr7:99199794-99199813

No.	Distal block	Cell Line	Cell type
1	chr7:99194719..99197734-chr7:99199252..99200969,3	K562	blood:
2	chr7:99199174..99201027-chr7:99204076..99205665,2	K562	blood:
3	chr7:99196211..99197734-chr7:99197881..99200752,2	K562	blood:
4	chr7:99190213..99192042-chr7:99198834..99201365,2	K562	blood:
5	chr7:99198781..99203463-chr7:99212852..99216698,6	K562	blood:
6	chr7:99192869..99194724-chr7:99199487..99201035,2	K562	blood:

Variant related genes	Relation type
ENSG00000244219	TF binding region
ENSG00000244219	Chromatin interaction
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10215758	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234586	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10247656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260157	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260896	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268692	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273355	1.00[AMR][1000 genomes]
rs10274078	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275948	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281981	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28390670	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28621023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728155	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99197200-99213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:99197800-99203800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:99198400-99213800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:99199400-99199800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:99199600-99199800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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