Variant report

Variant	rs28621023
Chromosome Location	chr7:99082149-99082150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99070856..99073411-chr7:99081785..99084342,2	MCF-7	breast:
2	chr7:99070549..99074806-chr7:99079713..99086160,8	K562	blood:
3	chr7:99070395..99072664-chr7:99081646..99084913,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198556	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10215758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231045	1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10234586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10247656	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10249095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10251931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255749	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258785	0.83[AFR][1000 genomes]
rs10258918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274601	1.00[AMR][1000 genomes]
rs10275948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28390670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41301652	0.91[AFR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99071200-99091000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:99071200-99091600	Weak transcription	Small Intestine	intestine
3	chr7:99071400-99090400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:99071400-99090600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:99071400-99090600	Weak transcription	Right Atrium	heart
6	chr7:99071400-99096200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:99071600-99090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:99071600-99091200	Weak transcription	Fetal Heart	heart
9	chr7:99071800-99084400	Weak transcription	Fetal Brain Male	brain
10	chr7:99071800-99088600	Weak transcription	Brain Substantia Nigra	brain
11	chr7:99071800-99090400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:99071800-99090400	Weak transcription	Brain Angular Gyrus	brain
13	chr7:99071800-99090400	Weak transcription	Psoas Muscle	Psoas
14	chr7:99071800-99090600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:99071800-99091600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:99072000-99086400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:99072400-99083600	Weak transcription	Stomach Mucosa	stomach
18	chr7:99072600-99091200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:99073200-99082200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:99073600-99084400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:99073800-99083800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:99073800-99085000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr7:99074000-99083600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:99074000-99084600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:99074000-99090400	Weak transcription	Colonic Mucosa	Colon
26	chr7:99074600-99083200	Strong transcription	Dnd41	blood
27	chr7:99075400-99083200	Strong transcription	Fetal Brain Female	brain
28	chr7:99076000-99084400	Weak transcription	Fetal Kidney	kidney
29	chr7:99076600-99085400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:99076600-99090400	Weak transcription	Lung	lung
31	chr7:99076800-99083000	Strong transcription	K562	blood
32	chr7:99076800-99083400	Strong transcription	Fetal Stomach	stomach
33	chr7:99076800-99085200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:99076800-99089800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:99076800-99090000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:99076800-99090400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:99077000-99084000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:99077000-99085200	Strong transcription	Primary T cells from cord blood	blood
39	chr7:99077000-99089800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:99077000-99089800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr7:99077000-99090400	Weak transcription	Esophagus	oesophagus
42	chr7:99077000-99090600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr7:99077000-99091200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:99077200-99090800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr7:99077200-99091200	Weak transcription	Hela-S3	cervix
46	chr7:99077400-99085000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:99077400-99085400	Strong transcription	Fetal Muscle Leg	muscle
48	chr7:99077400-99090000	Weak transcription	Brain Hippocampus Middle	brain
49	chr7:99077600-99082400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:99077600-99082400	Weak transcription	Placenta	Placenta

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