Variant report

Variant	rs10274601
Chromosome Location	chr7:98864407-98864408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10231045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10237782	1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10254863	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258918	1.00[AMR][1000 genomes]
rs10260157	1.00[AMR][1000 genomes]
rs10273355	1.00[AMR][1000 genomes]
rs10274078	1.00[AMR][1000 genomes]
rs10274095	1.00[AMR][1000 genomes]
rs10281981	1.00[AMR][1000 genomes]
rs28609333	1.00[AMR][1000 genomes]
rs28621023	1.00[AMR][1000 genomes]
rs6977564	1.00[AMR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98853400-98864600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:98860600-98865400	Weak transcription	Aorta	Aorta
3	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
4	chr7:98863600-98864800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:98863800-98871800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:98864000-98866600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:98864000-98866600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:98864000-98867000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:98864200-98866400	Enhancers	Stomach Mucosa	stomach
10	chr7:98864200-98866600	Enhancers	HepG2	liver
11	chr7:98864400-98864800	Enhancers	Gastric	stomach
12	chr7:98864400-98865400	Enhancers	A549	lung
13	chr7:98864400-98866200	Enhancers	Pancreas	Pancrea
14	chr7:98864400-98866600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:98864400-98866600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:98864400-98867000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:98864400-98867400	Enhancers	HMEC	breast
18	chr7:98864400-98867400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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