Variant report

Variant	rs10249159
Chromosome Location	chr7:98892811-98892812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10215758	1.00[AMR][1000 genomes]
rs10231045	1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10235168	1.00[AMR][1000 genomes]
rs10237782	1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10254863	1.00[AMR][1000 genomes]
rs10258918	1.00[AMR][1000 genomes]
rs10260157	1.00[AMR][1000 genomes]
rs10268692	1.00[AMR][1000 genomes]
rs10273355	1.00[AMR][1000 genomes]
rs10274078	1.00[AMR][1000 genomes]
rs10274095	1.00[AMR][1000 genomes]
rs10274601	1.00[AMR][1000 genomes]
rs10281981	1.00[AMR][1000 genomes]
rs28609333	1.00[AMR][1000 genomes]
rs28621023	1.00[AMR][1000 genomes]
rs6977564	1.00[AMR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
2	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:98881200-98899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:98890000-98894400	Weak transcription	Lung	lung
6	chr7:98890400-98894200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:98890800-98905800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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