Variant report

Variant	rs10235168
Chromosome Location	chr7:99019955-99019956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99004763..99008262-chr7:99018470..99023968,5	MCF-7	breast:
2	chr7:99019607..99022417-chr7:99035708..99037409,2	K562	blood:
3	chr7:99019766..99021951-chr7:99025804..99027414,2	MCF-7	breast:
4	chr7:99019797..99022684-chr7:99036471..99038097,2	MCF-7	breast:
5	chr7:98971628..98974461-chr7:99019124..99020982,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130429	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000106245	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10215758	1.00[AMR][1000 genomes]
rs10231045	1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10234586	1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10249095	1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10251931	1.00[AMR][1000 genomes]
rs10254863	1.00[AMR][1000 genomes]
rs10258918	1.00[AMR][1000 genomes]
rs10260157	1.00[AMR][1000 genomes]
rs10260896	1.00[AMR][1000 genomes]
rs10268692	1.00[AMR][1000 genomes]
rs10273355	1.00[AMR][1000 genomes]
rs10274078	1.00[AMR][1000 genomes]
rs10274095	1.00[AMR][1000 genomes]
rs10274601	1.00[AMR][1000 genomes]
rs10275948	1.00[AMR][1000 genomes]
rs10281981	1.00[AMR][1000 genomes]
rs28390670	1.00[AMR][1000 genomes]
rs28621023	1.00[AMR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv888767	chr7:99017832-99050039	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv888768	chr7:99017832-99052428	Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv888769	chr7:99018584-99041748	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99007200-99035400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99007800-99024000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:99008000-99023400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:99008000-99023600	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:99008000-99023800	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr7:99008000-99023800	Strong transcription	Placenta	Placenta
7	chr7:99008000-99024000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:99008000-99024000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:99008000-99024000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:99008000-99024000	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:99008000-99024000	Strong transcription	Spleen	Spleen
12	chr7:99008000-99024200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:99008000-99024200	Strong transcription	Fetal Stomach	stomach
14	chr7:99008000-99026600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:99008200-99023400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:99008200-99023600	Strong transcription	Fetal Intestine Large	intestine
17	chr7:99008200-99023800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:99008200-99023800	Strong transcription	Fetal Brain Female	brain
19	chr7:99008200-99023800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr7:99008200-99023800	Strong transcription	Fetal Muscle Leg	muscle
21	chr7:99008200-99024000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:99008200-99024000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:99008200-99024000	Strong transcription	Lung	lung
24	chr7:99008200-99024200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:99008400-99023200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:99008400-99023400	Strong transcription	Fetal Thymus	thymus
27	chr7:99008400-99023600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:99008400-99023600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:99008400-99023600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:99008400-99023600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:99008400-99023800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:99008400-99023800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:99008400-99024000	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:99008600-99023000	Strong transcription	Osteobl	bone
35	chr7:99008600-99023200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:99008600-99023200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr7:99008600-99023200	Strong transcription	NHEK	skin
38	chr7:99008600-99023600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr7:99008600-99023600	Strong transcription	Primary T cells from cord blood	blood
40	chr7:99008600-99023600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:99008600-99023800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:99008600-99023800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr7:99008600-99024000	Strong transcription	Adipose Nuclei	Adipose
44	chr7:99008600-99024200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:99008800-99023000	Strong transcription	Brain Anterior Caudate	brain
46	chr7:99008800-99023400	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:99008800-99023600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr7:99009000-99020800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr7:99009400-99023600	Strong transcription	Dnd41	blood
50	chr7:99009600-99023400	Strong transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links