Variant report

Variant	rs10237782
Chromosome Location	chr7:98789627-98789628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10231045	1.00[AMR][1000 genomes]
rs10232946	1.00[AMR][1000 genomes]
rs10248906	1.00[AMR][1000 genomes]
rs10249159	1.00[AMR][1000 genomes]
rs10254863	1.00[AMR][1000 genomes]
rs10274601	1.00[AMR][1000 genomes]
rs10281981	1.00[AMR][1000 genomes]
rs28609333	1.00[AMR][1000 genomes]
rs6977564	1.00[AMR][1000 genomes]
rs7779190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
4	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98782800-98790800	Weak transcription	Gastric	stomach
2	chr7:98785800-98791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:98787800-98790200	Enhancers	HepG2	liver
4	chr7:98788400-98790600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:98788600-98790800	Weak transcription	Stomach Mucosa	stomach
6	chr7:98788600-98791000	Weak transcription	Ovary	ovary
7	chr7:98789600-98790000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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