Variant report

Variant	rs10259330
Chromosome Location	chr7:99302058-99302059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10215758	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234586	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260157	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260896	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268692	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273355	1.00[AMR][1000 genomes]
rs10274078	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275948	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28390670	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28621023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728155	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3378448	chr7:99295540-99331065	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv522107	chr7:99300758-99314986	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99291400-99306600	Weak transcription	Left Ventricle	heart
2	chr7:99297400-99303800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:99297800-99316200	Weak transcription	Gastric	stomach
4	chr7:99297800-99317400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:99298000-99311600	Weak transcription	Pancreas	Pancrea
6	chr7:99298200-99303600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:99301400-99315400	Strong transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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