Variant report

Variant	rs1026641
Chromosome Location	chr6:114124489-114124490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10499075	1.00[ASN][1000 genomes]
rs17052544	1.00[ASN][1000 genomes]
rs17075355	1.00[ASN][1000 genomes]
rs17075374	1.00[ASN][1000 genomes]
rs17075386	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17184188	1.00[ASN][1000 genomes]
rs2498744	1.00[ASN][1000 genomes]
rs2498745	1.00[ASN][1000 genomes]
rs352090	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs35568516	1.00[ASN][1000 genomes]
rs4132138	0.86[EUR][1000 genomes]
rs45477193	0.82[EUR][1000 genomes]
rs4945972	1.00[ASN][1000 genomes]
rs548031	0.86[EUR][1000 genomes]
rs55884650	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55938064	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594930	0.86[EUR][1000 genomes]
rs612084	0.86[EUR][1000 genomes]
rs61506350	1.00[ASN][1000 genomes]
rs6901982	1.00[ASN][1000 genomes]
rs72942608	0.92[AMR][1000 genomes]
rs72942611	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72942612	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72942681	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72944607	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944627	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944632	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944642	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944645	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954652	1.00[ASN][1000 genomes]
rs72954659	1.00[ASN][1000 genomes]
rs72954689	1.00[ASN][1000 genomes]
rs72954700	1.00[ASN][1000 genomes]
rs72956702	1.00[ASN][1000 genomes]
rs72960753	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960758	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960763	1.00[ASN][1000 genomes]
rs72960768	0.92[AMR][1000 genomes]
rs72960775	0.92[AMR][1000 genomes]
rs773188	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114123200-114126200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr6:114124000-114125000	Weak transcription	Primary monocytes fromperipheralblood	blood

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