Variant report

Variant	rs72944645
Chromosome Location	chr6:114152263-114152264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114151106..114153462-chr6:114177784..114180243,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1026641	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499075	1.00[ASN][1000 genomes]
rs17052544	1.00[ASN][1000 genomes]
rs17075355	1.00[ASN][1000 genomes]
rs17075374	1.00[ASN][1000 genomes]
rs17075386	1.00[ASN][1000 genomes]
rs17184188	1.00[ASN][1000 genomes]
rs2498744	1.00[ASN][1000 genomes]
rs2498745	1.00[ASN][1000 genomes]
rs352090	0.87[EUR][1000 genomes]
rs35568516	1.00[ASN][1000 genomes]
rs4132138	0.91[EUR][1000 genomes]
rs45477193	0.87[EUR][1000 genomes]
rs4945972	1.00[ASN][1000 genomes]
rs548031	0.91[EUR][1000 genomes]
rs55884650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55938064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594930	0.91[EUR][1000 genomes]
rs612084	0.91[EUR][1000 genomes]
rs61506350	1.00[ASN][1000 genomes]
rs6901982	1.00[ASN][1000 genomes]
rs72942608	1.00[AMR][1000 genomes]
rs72942611	1.00[AMR][1000 genomes]
rs72942612	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72942681	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72944607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944627	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944632	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954652	1.00[ASN][1000 genomes]
rs72954659	1.00[ASN][1000 genomes]
rs72954689	1.00[ASN][1000 genomes]
rs72954700	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72956702	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960753	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960758	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960763	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960768	1.00[AMR][1000 genomes]
rs72960775	1.00[AMR][1000 genomes]
rs773188	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114147400-114154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:114147600-114154400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:114150200-114152400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:114150600-114152400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:114150600-114157200	Weak transcription	Pancreas	Pancrea
6	chr6:114151200-114158000	Weak transcription	Psoas Muscle	Psoas
7	chr6:114151400-114153000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:114151600-114152800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:114151600-114154600	Weak transcription	Osteobl	bone
10	chr6:114151800-114152600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:114151800-114154600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:114151800-114154800	Weak transcription	NH-A	brain

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