Variant report

Variant	rs55884650
Chromosome Location	chr6:114125766-114125767
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1026641	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499075	1.00[ASN][1000 genomes]
rs17052544	1.00[ASN][1000 genomes]
rs17075355	1.00[ASN][1000 genomes]
rs17075374	1.00[ASN][1000 genomes]
rs17075386	1.00[ASN][1000 genomes]
rs17184188	1.00[ASN][1000 genomes]
rs2498744	1.00[ASN][1000 genomes]
rs2498745	1.00[ASN][1000 genomes]
rs352090	0.82[EUR][1000 genomes]
rs35568516	1.00[ASN][1000 genomes]
rs4132138	0.86[EUR][1000 genomes]
rs45477193	0.82[EUR][1000 genomes]
rs4945972	1.00[ASN][1000 genomes]
rs548031	0.86[EUR][1000 genomes]
rs55938064	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594930	0.86[EUR][1000 genomes]
rs612084	0.86[EUR][1000 genomes]
rs61506350	1.00[ASN][1000 genomes]
rs6901982	1.00[ASN][1000 genomes]
rs72942608	1.00[AMR][1000 genomes]
rs72942611	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72942612	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72942681	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72944607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944632	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944642	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954652	1.00[ASN][1000 genomes]
rs72954659	1.00[ASN][1000 genomes]
rs72954689	1.00[ASN][1000 genomes]
rs72954700	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72956702	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960753	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960758	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960763	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960768	1.00[AMR][1000 genomes]
rs72960775	1.00[AMR][1000 genomes]
rs773188	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114123200-114126200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr6:114124800-114126200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:114124800-114126600	Weak transcription	HepG2	liver
4	chr6:114125000-114132600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:114125200-114126000	Enhancers	GM12878-XiMat	blood
6	chr6:114125600-114126200	Enhancers	Primary B cells from cord blood	blood
7	chr6:114125600-114126600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:114125600-114132400	Enhancers	Primary B cells from peripheral blood	blood

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