Variant report

Variant	rs72944642
Chromosome Location	chr6:114150506-114150507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1026641	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499075	1.00[ASN][1000 genomes]
rs17052544	1.00[ASN][1000 genomes]
rs17075355	1.00[ASN][1000 genomes]
rs17075374	1.00[ASN][1000 genomes]
rs17075386	1.00[ASN][1000 genomes]
rs17184188	1.00[ASN][1000 genomes]
rs2498744	1.00[ASN][1000 genomes]
rs2498745	1.00[ASN][1000 genomes]
rs352090	0.87[EUR][1000 genomes]
rs35568516	1.00[ASN][1000 genomes]
rs4132138	0.91[EUR][1000 genomes]
rs45477193	0.87[EUR][1000 genomes]
rs4945972	1.00[ASN][1000 genomes]
rs548031	0.91[EUR][1000 genomes]
rs55884650	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55938064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594930	0.91[EUR][1000 genomes]
rs612084	0.91[EUR][1000 genomes]
rs61506350	1.00[ASN][1000 genomes]
rs6901982	1.00[ASN][1000 genomes]
rs72942608	1.00[AMR][1000 genomes]
rs72942611	1.00[AMR][1000 genomes]
rs72942612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72942681	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72944607	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944632	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954652	1.00[ASN][1000 genomes]
rs72954659	1.00[ASN][1000 genomes]
rs72954689	1.00[ASN][1000 genomes]
rs72954700	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72956702	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960763	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72960768	1.00[AMR][1000 genomes]
rs72960775	1.00[AMR][1000 genomes]
rs773188	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114147400-114150600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:114147400-114151000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:114147400-114151000	Weak transcription	Small Intestine	intestine
4	chr6:114147400-114154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:114147600-114150600	Weak transcription	Osteobl	bone
6	chr6:114147600-114154400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:114147800-114151000	Weak transcription	Adipose Nuclei	Adipose
8	chr6:114149200-114151400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:114149600-114150600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:114149600-114152200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:114149800-114151800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:114149800-114151800	Enhancers	HSMM	muscle
13	chr6:114150000-114151000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:114150000-114151200	Enhancers	Psoas Muscle	Psoas
15	chr6:114150000-114151800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:114150000-114151800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:114150000-114151800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:114150200-114150600	Enhancers	Pancreas	Pancrea
19	chr6:114150200-114151200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:114150200-114151600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:114150200-114151600	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr6:114150200-114151800	Enhancers	Fetal Intestine Small	intestine
23	chr6:114150200-114151800	Enhancers	Fetal Kidney	kidney
24	chr6:114150200-114152000	Enhancers	Fetal Intestine Large	intestine
25	chr6:114150200-114152400	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr6:114150400-114150600	Flanking Active TSS	HSMMtube	muscle
27	chr6:114150400-114150800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:114150400-114150800	Weak transcription	Brain Anterior Caudate	brain
29	chr6:114150400-114151000	Enhancers	Fetal Muscle Leg	muscle
30	chr6:114150400-114151600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:114150400-114151800	Enhancers	NH-A	brain

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