Variant report

Variant	rs10268643
Chromosome Location	chr7:50826492-50826493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:50826386-50826584	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:50825624..50829260-chr7:50829688..50833624,4	K562	blood:
2	chr7:50825844..50827809-chr7:50859149..50861123,2	K562	blood:
3	chr7:50826033..50828575-chr7:50862954..50865716,2	K562	blood:
4	chr7:50824568..50827324-chr7:50838039..50840736,2	K562	blood:

Variant related genes	Relation type
GRB10	TF binding region
ENSG00000106070	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1014384	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1019000	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10226937	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10231012	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10235345	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10239268	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1024531	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10248029	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10258458	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264904	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273302	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10276986	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10281065	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464765	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464766	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464790	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10486761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238310	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238315	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11238325	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11238326	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238337	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238339	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11974751	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11978750	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11983539	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12668316	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12671577	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12674028	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718925	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718926	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718927	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718929	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718930	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13232029	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1859571	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2051895	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2051896	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2074719	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074720	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074721	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2074722	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074777	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2108349	0.86[AMR][1000 genomes]
rs2158670	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2286152	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329554	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2876846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801000	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6593164	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593173	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593174	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6593180	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6943153	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6943901	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6945597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6946194	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6951356	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957007	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6958750	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6960912	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6963498	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6966774	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6967612	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6971834	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6976572	0.86[AFR][1000 genomes]
rs6979369	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs757773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757777	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7785908	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7785914	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7786917	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7788511	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7793570	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7802338	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7803278	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7809623	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7809775	0.88[AMR][1000 genomes]
rs886700	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50798800-50832400	Weak transcription	HSMM	muscle
2	chr7:50798800-50837200	Weak transcription	HSMMtube	muscle
3	chr7:50807800-50834800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:50808000-50827200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:50808000-50829400	Weak transcription	Small Intestine	intestine
6	chr7:50808000-50832400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:50808000-50835800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:50808200-50834200	Weak transcription	Brain Angular Gyrus	brain
9	chr7:50810800-50829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:50810800-50829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:50811000-50829400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:50812600-50828200	Weak transcription	K562	blood
13	chr7:50812600-50829400	Weak transcription	NHDF-Ad	bronchial
14	chr7:50814400-50838800	Weak transcription	Adipose Nuclei	Adipose
15	chr7:50814800-50828400	Weak transcription	Fetal Brain Male	brain
16	chr7:50815000-50834400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:50816000-50834200	Weak transcription	A549	lung
18	chr7:50816200-50829400	Weak transcription	Aorta	Aorta
19	chr7:50816200-50831400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:50816200-50834000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:50816200-50849600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:50816800-50833800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:50819400-50831800	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:50819600-50833400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:50820200-50843000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:50820600-50827600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:50821400-50826800	Enhancers	Liver	Liver
28	chr7:50822000-50849800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:50822200-50826600	Enhancers	HepG2	liver
30	chr7:50822200-50827800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr7:50822200-50832200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr7:50822200-50835000	Weak transcription	Esophagus	oesophagus
33	chr7:50822400-50834200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:50822600-50829200	Weak transcription	Osteobl	bone
35	chr7:50822600-50831600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:50822800-50828400	Weak transcription	Primary T cells from cord blood	blood
37	chr7:50822800-50833800	Weak transcription	Hela-S3	cervix
38	chr7:50822800-50850200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr7:50823000-50832200	Weak transcription	Brain Germinal Matrix	brain
40	chr7:50823200-50834000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr7:50823400-50827400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:50823400-50832400	Weak transcription	Fetal Brain Female	brain
43	chr7:50823600-50827000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr7:50823600-50829200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:50823600-50829400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr7:50823600-50830000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:50823600-50834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:50823600-50834800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:50823600-50849200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:50823600-50849200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links