Variant report

Variant	rs1024531
Chromosome Location	chr7:50813956-50813957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1014384	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs1019000	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10226937	0.89[AMR][1000 genomes]
rs10231012	0.85[AMR][1000 genomes]
rs10235345	0.82[AMR][1000 genomes]
rs10239268	0.82[AMR][1000 genomes]
rs1024529	0.97[AFR][1000 genomes]
rs10248029	0.89[AMR][1000 genomes]
rs10258458	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10264904	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10268643	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10273302	0.82[AMR][1000 genomes]
rs10276986	0.82[AMR][1000 genomes]
rs10281065	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10464765	0.84[AMR][1000 genomes]
rs10464766	0.84[AMR][1000 genomes]
rs10464790	0.84[AMR][1000 genomes]
rs10486761	0.89[CEU][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11238297	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11238310	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11238311	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11238313	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11238315	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11238325	0.85[AMR][1000 genomes]
rs11238326	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs11238337	0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs11238339	0.82[AMR][1000 genomes]
rs11763072	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11763778	0.92[ASN][1000 genomes]
rs11765762	0.92[ASN][1000 genomes]
rs11974751	0.89[AMR][1000 genomes]
rs11978750	0.82[AMR][1000 genomes]
rs11983539	0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs12536500	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs12668316	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12671577	0.85[AMR][1000 genomes]
rs12674028	0.85[AMR][1000 genomes]
rs12718925	0.84[AMR][1000 genomes]
rs12718926	0.84[AMR][1000 genomes]
rs12718927	0.87[AMR][1000 genomes]
rs12718929	0.84[AMR][1000 genomes]
rs12718930	0.84[AMR][1000 genomes]
rs13232029	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13311390	0.80[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1859571	0.86[AMR][1000 genomes]
rs1962391	0.84[AFR][1000 genomes]
rs2051895	0.87[AMR][1000 genomes]
rs2051896	0.86[AMR][1000 genomes]
rs2058014	0.88[ASN][1000 genomes]
rs2074719	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2074720	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2074721	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2074722	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2074777	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2108349	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2158670	0.82[AMR][1000 genomes]
rs2190502	0.88[ASN][1000 genomes]
rs2214963	0.88[ASN][1000 genomes]
rs2237490	0.82[ASN][1000 genomes]
rs2286152	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2286154	0.80[CEU][hapmap];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2299153	0.88[ASN][1000 genomes]
rs2329489	0.88[ASN][1000 genomes]
rs2329554	0.85[AMR][1000 genomes]
rs2876846	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3801000	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4521715	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs4947806	0.92[ASN][1000 genomes]
rs6593164	0.83[CEU][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6593173	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6593174	0.83[CEU][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6593180	0.86[AMR][1000 genomes]
rs6943153	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6943901	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs6945597	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6946194	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6951356	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6957007	0.84[AMR][1000 genomes]
rs6958750	0.86[AMR][1000 genomes]
rs6960912	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6963498	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs6966774	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6967612	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6971834	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs6979369	0.82[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs734422	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs757773	0.84[CEU][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs757774	0.82[CEU][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs757777	0.82[AMR][1000 genomes]
rs7782797	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs7785908	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7785914	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7786917	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs7788511	0.82[AMR][1000 genomes]
rs7793570	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7802338	0.81[AMR][1000 genomes]
rs7803278	0.86[AMR][1000 genomes]
rs7809623	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7809775	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs886700	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs933360	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1031138	chr7:50651793-50814881	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50788000-50816000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:50798600-50822600	Weak transcription	Ovary	ovary
3	chr7:50798800-50815200	Weak transcription	Aorta	Aorta
4	chr7:50798800-50815200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:50798800-50824800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:50798800-50832400	Weak transcription	HSMM	muscle
7	chr7:50798800-50837200	Weak transcription	HSMMtube	muscle
8	chr7:50799000-50815200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:50799000-50817400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:50799000-50823000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:50801600-50814400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:50802000-50814200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:50802200-50815600	Weak transcription	Placenta	Placenta
14	chr7:50802600-50824000	Weak transcription	NH-A	brain
15	chr7:50802800-50814400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:50807600-50821800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr7:50807800-50821800	Weak transcription	Esophagus	oesophagus
18	chr7:50807800-50834800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:50808000-50814400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:50808000-50814400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:50808000-50814400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:50808000-50814400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:50808000-50814600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:50808000-50815400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:50808000-50815600	Weak transcription	Fetal Lung	lung
26	chr7:50808000-50816000	Weak transcription	HepG2	liver
27	chr7:50808000-50817600	Weak transcription	Colon Smooth Muscle	Colon
28	chr7:50808000-50818400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:50808000-50818600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:50808000-50821200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:50808000-50821600	Weak transcription	Gastric	stomach
32	chr7:50808000-50827200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr7:50808000-50829400	Weak transcription	Small Intestine	intestine
34	chr7:50808000-50832400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr7:50808000-50835800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:50808200-50814600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:50808200-50815000	Weak transcription	Brain Anterior Caudate	brain
38	chr7:50808200-50815200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:50808200-50815400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:50808200-50818800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:50808200-50834200	Weak transcription	Brain Angular Gyrus	brain
42	chr7:50808600-50818800	Weak transcription	Brain Hippocampus Middle	brain
43	chr7:50809000-50821400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:50809200-50814600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:50809400-50822200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:50810400-50815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:50810800-50821200	Weak transcription	Primary T cells from cord blood	blood
48	chr7:50810800-50829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:50810800-50829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:50811000-50818800	Weak transcription	Brain Substantia Nigra	brain

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