Variant report

Variant	rs757773
Chromosome Location	chr7:50821425-50821426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50820026..50825124-chr7:50858182..50862797,5	K562	blood:

Variant related genes	Relation type
ENSG00000106070	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1014384	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1019000	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10226937	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10231012	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10235345	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10239268	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1024531	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10248029	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10258458	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268643	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273302	0.88[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10276986	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10281065	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464765	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464766	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464790	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10486761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238310	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238315	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11238325	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11238326	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238337	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238339	0.88[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11763072	0.90[JPT][hapmap]
rs11974751	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11978750	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11983539	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12665949	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs12668316	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12671577	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12674028	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12718925	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718926	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718927	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718929	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718930	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13232029	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13311390	0.90[JPT][hapmap]
rs1859571	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2051895	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2051896	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2074719	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074720	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074721	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2074722	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074777	0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2108349	0.86[AMR][1000 genomes]
rs2158670	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2286152	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286154	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329554	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2876846	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801000	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6593164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593173	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6593180	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6593182	0.83[CEU][hapmap]
rs6943153	0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6943901	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6945597	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6946194	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6951356	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957007	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6958750	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6960912	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6963498	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6966774	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6967612	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6971834	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6976572	0.81[AFR][1000 genomes]
rs6979369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734422	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs757774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757777	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7785908	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7785914	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7786917	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7788511	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7793570	0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7802338	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7803278	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7809623	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7809775	0.88[AMR][1000 genomes]
rs886700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50798600-50822600	Weak transcription	Ovary	ovary
2	chr7:50798800-50824800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:50798800-50832400	Weak transcription	HSMM	muscle
4	chr7:50798800-50837200	Weak transcription	HSMMtube	muscle
5	chr7:50799000-50823000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:50802600-50824000	Weak transcription	NH-A	brain
7	chr7:50807600-50821800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:50807800-50821800	Weak transcription	Esophagus	oesophagus
9	chr7:50807800-50834800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:50808000-50821600	Weak transcription	Gastric	stomach
11	chr7:50808000-50827200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:50808000-50829400	Weak transcription	Small Intestine	intestine
13	chr7:50808000-50832400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:50808000-50835800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:50808200-50834200	Weak transcription	Brain Angular Gyrus	brain
16	chr7:50809400-50822200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:50810800-50829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:50810800-50829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:50811000-50829400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:50811400-50821600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:50812200-50822600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:50812600-50828200	Weak transcription	K562	blood
23	chr7:50812600-50829400	Weak transcription	NHDF-Ad	bronchial
24	chr7:50813800-50824600	Weak transcription	Fetal Muscle Leg	muscle
25	chr7:50814400-50824600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:50814400-50838800	Weak transcription	Adipose Nuclei	Adipose
27	chr7:50814800-50828400	Weak transcription	Fetal Brain Male	brain
28	chr7:50815000-50822400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:50815000-50834400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:50816000-50822400	Weak transcription	Brain Germinal Matrix	brain
31	chr7:50816000-50824800	Weak transcription	NHLF	lung
32	chr7:50816000-50825600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:50816000-50834200	Weak transcription	A549	lung
34	chr7:50816200-50821800	Weak transcription	Lung	lung
35	chr7:50816200-50822000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:50816200-50823000	Weak transcription	Fetal Lung	lung
37	chr7:50816200-50829400	Weak transcription	Aorta	Aorta
38	chr7:50816200-50831400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:50816200-50834000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr7:50816200-50849600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:50816400-50821800	Weak transcription	Fetal Brain Female	brain
42	chr7:50816600-50822000	Weak transcription	Placenta	Placenta
43	chr7:50816800-50822200	Weak transcription	Hela-S3	cervix
44	chr7:50816800-50822200	Weak transcription	HepG2	liver
45	chr7:50816800-50833800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr7:50817400-50822000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:50817400-50825800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:50818200-50822400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr7:50819200-50823800	Weak transcription	Brain Anterior Caudate	brain
50	chr7:50819200-50823800	Weak transcription	HUVEC	blood vessel

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