Variant report

Variant	rs6979369
Chromosome Location	chr7:50831871-50831872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50825624..50829260-chr7:50829688..50833624,4	K562	blood:
2	chr7:50822915..50825463-chr7:50831567..50833074,2	K562	blood:
3	chr7:50831271..50832774-chr7:50836128..50838044,2	K562	blood:

Variant related genes	Relation type
ENSG00000106070	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1014384	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1019000	0.88[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10226937	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10231012	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10235345	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10239268	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1024531	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10248029	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10258458	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264904	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268643	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273302	0.87[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10276986	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10281065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464765	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464766	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464790	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10486761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238310	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238311	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238313	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11238325	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11238326	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238337	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238339	0.87[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11763072	0.90[JPT][hapmap]
rs11974751	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11978750	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11983539	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12665949	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs12668316	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12671577	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12674028	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718925	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718926	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718927	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718929	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718930	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13232029	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13311390	0.90[JPT][hapmap]
rs1859571	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2051895	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2051896	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2074719	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074720	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074721	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2074722	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074777	0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2108349	0.85[AMR][1000 genomes]
rs2158670	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2286152	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286154	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329554	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2876846	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801000	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6593164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6593180	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6593182	0.81[CEU][hapmap]
rs6943153	0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6943901	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6945597	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6946194	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6951356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957007	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6958750	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6960912	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6963498	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6966774	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6967612	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6971834	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs734422	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs757773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757777	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7785908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7785914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7786917	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7788511	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7793570	0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7802338	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7803278	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7809623	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7809775	0.85[AMR][1000 genomes]
rs886700	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv824091	chr7:50828682-50885984	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50798800-50832400	Weak transcription	HSMM	muscle
2	chr7:50798800-50837200	Weak transcription	HSMMtube	muscle
3	chr7:50807800-50834800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:50808000-50832400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:50808000-50835800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:50808200-50834200	Weak transcription	Brain Angular Gyrus	brain
7	chr7:50814400-50838800	Weak transcription	Adipose Nuclei	Adipose
8	chr7:50815000-50834400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:50816000-50834200	Weak transcription	A549	lung
10	chr7:50816200-50834000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:50816200-50849600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:50816800-50833800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:50819600-50833400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:50820200-50843000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:50822000-50849800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:50822200-50832200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr7:50822200-50835000	Weak transcription	Esophagus	oesophagus
18	chr7:50822400-50834200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:50822800-50833800	Weak transcription	Hela-S3	cervix
20	chr7:50822800-50850200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:50823000-50832200	Weak transcription	Brain Germinal Matrix	brain
22	chr7:50823200-50834000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:50823400-50832400	Weak transcription	Fetal Brain Female	brain
24	chr7:50823600-50834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:50823600-50834800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:50823600-50849200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:50823600-50849200	Weak transcription	Fetal Lung	lung
28	chr7:50823800-50834600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:50824400-50834800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:50824400-50843200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:50824800-50836400	Weak transcription	NH-A	brain
32	chr7:50825000-50832200	Weak transcription	Brain Substantia Nigra	brain
33	chr7:50826000-50834200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:50826000-50839000	Weak transcription	Ovary	ovary
35	chr7:50826400-50833200	Weak transcription	Fetal Intestine Large	intestine
36	chr7:50826400-50836200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:50826600-50848400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:50826800-50832000	Weak transcription	Liver	Liver
39	chr7:50828000-50834200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:50828000-50834800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:50828200-50833800	Weak transcription	Fetal Heart	heart
42	chr7:50828800-50837200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:50829400-50833800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:50829600-50832400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:50829600-50834400	Weak transcription	K562	blood
46	chr7:50829800-50834200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:50829800-50838200	Weak transcription	Aorta	Aorta
48	chr7:50829800-50838800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr7:50829800-50849400	Weak transcription	Osteobl	bone
50	chr7:50830000-50832600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links