The 2.0 version of rSNPBase

Variant report

Variant rs3801000
Chromosome Location chr7:50811081-50811082
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:50788000-50816000 Weak transcription HUES64 Cell Line embryonic stem cell
2 chr7:50789400-50811600 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr7:50798000-50812000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr7:50798600-50822600 Weak transcription Ovary ovary
5 chr7:50798800-50811400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr7:50798800-50815200 Weak transcription Aorta Aorta
7 chr7:50798800-50815200 Weak transcription Stomach Smooth Muscle stomach
8 chr7:50798800-50824800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr7:50798800-50832400 Weak transcription HSMM muscle
10 chr7:50798800-50837200 Weak transcription HSMMtube muscle
11 chr7:50799000-50815200 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr7:50799000-50817400 Weak transcription Rectal Smooth Muscle rectum
13 chr7:50799000-50823000 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr7:50799200-50811400 Weak transcription Fetal Brain Female brain
15 chr7:50800400-50811200 Weak transcription Fetal Stomach stomach
16 chr7:50801600-50811400 Weak transcription Osteobl bone
17 chr7:50801600-50814400 Weak transcription Muscle Satellite Cultured Cells --
18 chr7:50802000-50811200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr7:50802000-50814200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr7:50802200-50811200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr7:50802200-50815600 Weak transcription Placenta Placenta
22 chr7:50802600-50813200 Weak transcription Hela-S3 cervix
23 chr7:50802600-50824000 Weak transcription NH-A brain
24 chr7:50802800-50814400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr7:50804600-50811600 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr7:50806400-50811800 Weak transcription K562 blood
27 chr7:50807600-50821800 Weak transcription Fetal Muscle Trunk muscle
28 chr7:50807800-50821800 Weak transcription Esophagus oesophagus
29 chr7:50807800-50834800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr7:50808000-50811200 Weak transcription Lung lung
31 chr7:50808000-50811200 Weak transcription Spleen Spleen
32 chr7:50808000-50811400 Weak transcription Adipose Nuclei Adipose
33 chr7:50808000-50811400 Weak transcription Right Atrium heart
34 chr7:50808000-50811600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr7:50808000-50813600 Weak transcription Right Ventricle heart
36 chr7:50808000-50813800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr7:50808000-50814400 Weak transcription H1 Cell Line embryonic stem cell
38 chr7:50808000-50814400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr7:50808000-50814400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr7:50808000-50814400 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr7:50808000-50814600 Weak transcription H9 Cell Line embryonic stem cell
42 chr7:50808000-50815400 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr7:50808000-50815600 Weak transcription Fetal Lung lung
44 chr7:50808000-50816000 Weak transcription HepG2 liver
45 chr7:50808000-50817600 Weak transcription Colon Smooth Muscle Colon
46 chr7:50808000-50818400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr7:50808000-50818600 Weak transcription Brain Cingulate Gyrus brain
48 chr7:50808000-50821200 Weak transcription Primary neutrophils fromperipheralblood blood
49 chr7:50808000-50821600 Weak transcription Gastric stomach
50 chr7:50808000-50827200 Weak transcription iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015