Variant report

Variant	rs1032450
Chromosome Location	chr12:104046601-104046602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11111696	0.81[EUR][1000 genomes]
rs11111703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17034281	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55742910	0.84[AMR][1000 genomes]
rs61937794	0.81[EUR][1000 genomes]
rs703631	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs831425	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs831426	0.86[AFR][1000 genomes]
rs831681	1.00[YRI][hapmap];0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104033200-104062200	Weak transcription	Spleen	Spleen
2	chr12:104044400-104051200	Weak transcription	HSMMtube	muscle
3	chr12:104045800-104049600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr12:104046400-104046800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:104046400-104047200	Enhancers	Duodenum Mucosa	Duodenum
6	chr12:104046600-104047000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:104046600-104047000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:104046600-104047200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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