Variant report

Variant	rs831681
Chromosome Location	chr12:104051298-104051299
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1032450	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11111703	0.97[AFR][1000 genomes]
rs17034281	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs703631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs831425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs831426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs831432	0.86[ASN][1000 genomes]
rs831433	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104033200-104062200	Weak transcription	Spleen	Spleen
2	chr12:104047000-104059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:104047200-104051400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr12:104049400-104051600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:104051000-104052400	Enhancers	Primary T cells from cord blood	blood
6	chr12:104051200-104051800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:104051200-104051800	Enhancers	HSMM	muscle
8	chr12:104051200-104052000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:104051200-104052000	Enhancers	HSMMtube	muscle
10	chr12:104051200-104052200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr12:104051200-104052200	Enhancers	Rectal Smooth Muscle	rectum
12	chr12:104051200-104052600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr12:104051200-104053200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links